Genome organization and botanical diversity
AH Paterson, C Queitsch - The Plant Cell, 2024 - academic.oup.com
The rich diversity of angiosperms, both the planet's dominant flora and the cornerstone of
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …
agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore …
Plant tRNA functions beyond their major role in translation
M Chery, L Drouard - Journal of Experimental Botany, 2023 - academic.oup.com
Transfer RNAs (tRNAs) are well known for their essential function as adapters in delivering
amino acids to ribosomes and making the link between mRNA and protein according to the …
amino acids to ribosomes and making the link between mRNA and protein according to the …
Mapping nucleosome-resolution chromatin organization and enhancer-promoter loops in plants using Micro-C-XL
L Sun, J Zhou, X Xu, Y Liu, N Ma, Y Liu, W Nie… - Nature …, 2024 - nature.com
Although chromatin organizations in plants have been dissected at the scales of
compartments and topologically associating domain (TAD)-like domains, there remains a …
compartments and topologically associating domain (TAD)-like domains, there remains a …
3D organization of regulatory elements for transcriptional regulation in Arabidopsis
L Deng, Q Zhou, J Zhou, Q Zhang, Z Jia, G Zhu… - Genome Biology, 2023 - Springer
Background Although spatial organization of compartments and topologically associating
domains at large scale is relatively well studied, the spatial organization of regulatory …
domains at large scale is relatively well studied, the spatial organization of regulatory …
Polymorphic inverted repeats near coding genes impact chromatin topology and phenotypic traits in Arabidopsis thaliana
Transposons are mobile elements that are commonly silenced to protect eukaryotic genome
integrity. In plants, transposable element (TE)-derived inverted repeats (IRs) are commonly …
integrity. In plants, transposable element (TE)-derived inverted repeats (IRs) are commonly …
Light control of three‐dimensional chromatin organization in soybean
Higher‐order chromatin structure is critical for regulation of gene expression. In plants, light
profoundly affects the morphogenesis of emerging seedlings as well as global gene …
profoundly affects the morphogenesis of emerging seedlings as well as global gene …
Light, chromatin, action: nuclear events regulating light signaling in Arabidopsis
E Patitaki, G Schivre, A Zioutopoulou… - New …, 2022 - Wiley Online Library
The plant nucleus provides a major hub for environmental signal integration at the chromatin
level. Multiple light signaling pathways operate and exchange information by regulating a …
level. Multiple light signaling pathways operate and exchange information by regulating a …
Chromatin dynamics and subnuclear gene positioning for transcriptional regulation
T Sakamoto, S Matsunaga - Current Opinion in Plant Biology, 2023 - Elsevier
Plants have been found to exhibit diverse characteristics and functions of chromatin
organization, showing both similarities and differences to animals. It is becoming clear how …
organization, showing both similarities and differences to animals. It is becoming clear how …
A fine-scale Arabidopsis chromatin landscape reveals chromatin conformation-associated transcriptional dynamics
Plants, as sessile organisms, deploy transcriptional dynamics for adapting to extreme growth
conditions such as cold stress. Emerging evidence suggests that chromatin architecture …
conditions such as cold stress. Emerging evidence suggests that chromatin architecture …
Mutations of PDS5 genes enhance TAD-like domain formation Arabidopsis thaliana
AM Göbel, S Zhou, Z Wang, S Tzourtzou… - Nature …, 2024 - nature.com
In eukaryotes, topologically associating domains (TADs) organize the genome into
functional compartments. While TAD-like structures are common in mammals and many …
functional compartments. While TAD-like structures are common in mammals and many …