Information retrieval and text mining technologies for chemistry
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …
reports, or the web is a pressing need shared by researchers and patent attorneys from …
Deep learning with word embeddings improves biomedical named entity recognition
Motivation Text mining has become an important tool for biomedical research. The most
fundamental text-mining task is the recognition of biomedical named entities (NER), such as …
fundamental text-mining task is the recognition of biomedical named entities (NER), such as …
TaggerOne: joint named entity recognition and normalization with semi-Markov Models
Motivation: Text mining is increasingly used to manage the accelerating pace of the
biomedical literature. Many text mining applications depend on accurate named entity …
biomedical literature. Many text mining applications depend on accurate named entity …
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
Named entity recognition (NER) is an important step in biomedical information extraction
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
Transfer learning for biomedical named entity recognition with neural networks
Motivation The explosive increase of biomedical literature has made information extraction
an increasingly important tool for biomedical research. A fundamental task is the recognition …
an increasingly important tool for biomedical research. A fundamental task is the recognition …
Text mining patents for biomedical knowledge
R Rodriguez-Esteban, M Bundschus - Drug discovery today, 2016 - Elsevier
Highlights•Text mining techniques can unlock the information stored in biomedical
patents.•Most research in mining such patents is limited to identifying terms.•Future …
patents.•Most research in mining such patents is limited to identifying terms.•Future …
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning
Motivation Biomedical named entity recognition (BioNER) seeks to automatically recognize
biomedical entities in natural language text, serving as a necessary foundation for …
biomedical entities in natural language text, serving as a necessary foundation for …
Chemu 2020: Natural language processing methods are effective for information extraction from chemical patents
Chemical patents represent a valuable source of information about new chemical
compounds, which is critical to the drug discovery process. Automated information extraction …
compounds, which is critical to the drug discovery process. Automated information extraction …
HUNER: improving biomedical NER with pretraining
Motivation Several recent studies showed that the application of deep neural networks
advanced the state-of-the-art in named entity recognition (NER), including biomedical NER …
advanced the state-of-the-art in named entity recognition (NER), including biomedical NER …
Overview of bioasq 2021: The ninth bioasq challenge on large-scale biomedical semantic indexing and question answering
A Nentidis, G Katsimpras, E Vandorou… - Experimental IR Meets …, 2021 - Springer
Advancing the state-of-the-art in large-scale biomedical semantic indexing and question
answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks …
answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks …