Review of alignment and SNP calling algorithms for next-generation sequencing data
M Mielczarek, J Szyda - Journal of applied genetics, 2016 - Springer
Application of the massive parallel sequencing technology has become one of the most
important issues in life sciences. Therefore, it was crucial to develop bioinformatics tools for …
important issues in life sciences. Therefore, it was crucial to develop bioinformatics tools for …
[HTML][HTML] Computational tools for viral metagenomics and their application in clinical research
There are 100 times more virions than eukaryotic cells in a healthy human body. The
characterization of human-associated viral communities in a non-pathological state and the …
characterization of human-associated viral communities in a non-pathological state and the …
snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
V Bhardwaj, S Heyne, K Sikora, L Rabbani… - …, 2019 - academic.oup.com
Due to the rapidly increasing scale and diversity of epigenomic data, modular and scalable
analysis workflows are of wide interest. Here we present snakePipes, a workflow package …
analysis workflows are of wide interest. Here we present snakePipes, a workflow package …
Metagenomics using next-generation sequencing
Traditionally, microbial genome sequencing has been restricted to the small number of
species that can be grown in pure culture [1]. The progressive development of culture …
species that can be grown in pure culture [1]. The progressive development of culture …
SeqMule: automated pipeline for analysis of human exome/genome sequencing data
Next-generation sequencing (NGS) technology has greatly helped us identify disease-
contributory variants for Mendelian diseases. However, users are often faced with issues …
contributory variants for Mendelian diseases. However, users are often faced with issues …
Identification of genes involved in biosynthesis of mannan polysaccharides in Dendrobium officinale by RNA-seq analysis
C He, J Zhang, X Liu, S Zeng, K Wu, Z Yu, X Wang… - Plant Molecular …, 2015 - Springer
Dendrobium officinale is a traditional Chinese medicinal plant. The stems of D. officinale
contain mannan polysaccharides, which are promising bioactive polysaccharides for use as …
contain mannan polysaccharides, which are promising bioactive polysaccharides for use as …
Transcriptome sequencing for SNP discovery across Cucumis melo
Abstract Background Melon (Cucumis melo L.) is a highly diverse species that is cultivated
worldwide. Recent advances in massively parallel sequencing have begun to allow the …
worldwide. Recent advances in massively parallel sequencing have begun to allow the …
Genome sequence and description of the mosquitocidal and heavy metal tolerant strain Lysinibacillus sphaericus CBAM5
Lysinibacillus sphaericus CBAM5, was isolated from subsurface soil of oil well explorations
in the Easter Planes of Colombia. This strain has potential in bioremediation of heavy-metal …
in the Easter Planes of Colombia. This strain has potential in bioremediation of heavy-metal …
The transcriptome of Spodoptera exigua larvae exposed to different types of microbes
L Pascual, AK Jakubowska, JM Blanca… - Insect biochemistry and …, 2012 - Elsevier
We have obtained and characterized the transcriptome of Spodoptera exigua larvae with
special emphasis on pathogen-induced genes. In order to obtain a highly representative …
special emphasis on pathogen-induced genes. In order to obtain a highly representative …
A primer on metagenomics and next‐generation sequencing in fish gut microbiome research
The fish gut is a complex ecosystem populated by an exceedingly diverse and assorted
group of microbes, influenced by various factors such as habitat salinity, temperature, trophic …
group of microbes, influenced by various factors such as habitat salinity, temperature, trophic …