Diversity and dynamism of IgA− microbiota interactions

KE Huus, C Petersen, BB Finlay - Nature Reviews Immunology, 2021 - nature.com
IgA mediates microbial homeostasis at the intestinal mucosa. Within the gut, IgA acts in a
context-dependent manner to both prevent and promote bacterial colonization and to …

Bioinformatic and statistical analysis of adaptive immune repertoires

V Greiff, E Miho, U Menzel, ST Reddy - Trends in immunology, 2015 - cell.com
High-throughput sequencing (HTS) of immune repertoires has enabled the quantitative
analysis of adaptive immune responses and offers the potential to revolutionize research in …

An antibody from single human VH-rearranging mouse neutralizes all SARS-CoV-2 variants through BA.5 by inhibiting membrane fusion

S Luo, J Zhang, AJB Kreutzberger, A Eaton… - Science …, 2022 - science.org
SARS-CoV-2 Omicron subvariants have generated a worldwide health crisis due to
resistance to most approved SARS-CoV-2 neutralizing antibodies and evasion of …

Atlas of breast cancer infiltrated B-lymphocytes revealed by paired single-cell RNA-sequencing and antigen receptor profiling

Q Hu, Y Hong, P Qi, G Lu, X Mai, S Xu, X He… - Nature …, 2021 - nature.com
To gain mechanistic insights into the functions and developmental dynamics of tumor-
infiltrated immune cells, especially B-lymphocytes, here we combine single-cell RNA …

In-depth determination and analysis of the human paired heavy-and light-chain antibody repertoire

BJ DeKosky, T Kojima, A Rodin, W Charab… - Nature medicine, 2015 - nature.com
High-throughput immune repertoire sequencing has emerged as a critical step in the
understanding of adaptive responses following infection or vaccination or in autoimmunity …

Association of the autoimmune disease scleroderma with an immunologic response to cancer

CG Joseph, E Darrah, AA Shah, AD Skora… - Science, 2014 - science.org
Autoimmune diseases are thought to be initiated by exposures to foreign antigens that cross-
react with endogenous molecules. Scleroderma is an autoimmune connective tissue …

Comprehensive serological profiling of human populations using a synthetic human virome

GJ Xu, T Kula, Q Xu, MZ Li, SD Vernon, T Ndung'u… - Science, 2015 - science.org
Introduction The collection of viruses found to infect humans can have profound effects on
human health. In addition to directly causing acute or chronic illness, viral infection can alter …

A framework for highly multiplexed dextramer mapping and prediction of T cell receptor sequences to antigen specificity

W Zhang, PG Hawkins, J He, NT Gupta, J Liu… - Science …, 2021 - science.org
T cell receptor (TCR) antigen–specific recognition is essential for the adaptive immune
system. However, building a TCR-antigen interaction map has been challenging due to the …

Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires

BJ DeKosky, OI Lungu, D Park… - Proceedings of the …, 2016 - National Acad Sciences
Elucidating how antigen exposure and selection shape the human antibody repertoire is
fundamental to our understanding of B-cell immunity. We sequenced the paired heavy-and …

Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development

V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook… - Cell reports, 2017 - cell.com
Antibody repertoire diversity and plasticity is crucial for broad protective immunity.
Repertoires change in size and diversity across multiple B cell developmental stages and in …