Recent advances in fragment-based QSAR and multi-dimensional QSAR methods

KZ Myint, XQ Xie - International journal of molecular sciences, 2010 - mdpi.com
This paper provides an overview of recently developed two dimensional (2D) fragment-
based QSAR methods as well as other multi-dimensional approaches. In particular, we …

4D-QSAR: perspectives in drug design

CH Andrade, KFM Pasqualoto, EI Ferreira… - Molecules, 2010 - mdpi.com
Drug design is a process driven by innovation and technological breakthroughs involving a
combination of advanced experimental and computational methods. A broad variety of …

Molecular machine learning with conformer ensembles

S Axelrod, R Gomez-Bombarelli - Machine Learning: Science …, 2023 - iopscience.iop.org
Virtual screening can accelerate drug discovery by identifying promising candidates for
experimental evaluation. Machine learning is a powerful method for screening, as it can …

Recent advances in multidimensional QSAR (4D-6D): a critical review

MG Damale, SN Harke… - Mini reviews in …, 2014 - ingentaconnect.com
The quantitative structure activity relationship (QSAR) study is the most cited and reliable
computational technique used for decades to obtain information about a substituent's …

Design, synthesis and biological evaluation of novel anti-cytokine 1, 2, 4-triazine derivatives

M Khoshneviszadeh, MH Ghahremani… - Bioorganic & medicinal …, 2013 - Elsevier
Abstract A series of 16 novel 1, 2, 4-triazine derivatives bearing hydrazone moiety (7a–7p)
have been designed, synthesized and evaluated for their activity to inhibit IL-1β and TNF-α …

Receptor dependent multidimensional QSAR for modeling drug-receptor interactions

J Polanski - Current medicinal chemistry, 2009 - ingentaconnect.com
Quantitative Structure Activity Relationship (QSAR) is an approach of mapping chemical
structure to properties. A significant development can be observed in the last two decades in …

Molecular dynamics simulation and free energy calculation studies of the binding mechanism of allosteric inhibitors with p38α MAP kinase

Y Yang, Y Shen, H Liu, X Yao - Journal of Chemical Information …, 2011 - ACS Publications
p38 MAP kinase is a promising target for anti-inflammatory treatment. The classical kinase
inhibitors imatinib and sorafenib as well as BI-1 and BIRB-796 were reported to bind in the …

Two decades of 4D-QSAR: A dying art or staging a comeback?

A Bak - International Journal of Molecular Sciences, 2021 - mdpi.com
A key question confronting computational chemists concerns the preferable ligand geometry
that fits complementarily into the receptor pocket. Typically, the postulated 'bioactive'3D …

4D-quantitative structure–activity relationship modeling: making a comeback

D Fourches, J Ash - Expert opinion on drug discovery, 2019 - Taylor & Francis
ABSTRACT Introduction: Predictive Quantitative Structure–Activity Relationship (QSAR)
modeling has become an essential methodology for rapidly assessing various properties of …

Sequence, structure, and active site analyses of p38 MAP kinase: exploiting DFG-out conformation as a strategy to design new type II leads

P Badrinarayan, GN Sastry - Journal of chemical information and …, 2011 - ACS Publications
A new knowledge, structure, and sequence based strategy involving the effective
exploitation of the DFG-out conformation is delineated. A comprehensive analysis of the …