A census of human cancer genes

PA Futreal, L Coin, M Marshall, T Down… - Nature reviews …, 2004 - nature.com
A central aim of cancer research has been to identify the mutated genes that are causally
implicated in oncogenesis ('cancer genes'). After two decades of searching, how many have …

Mobile genetic elements: the agents of open source evolution

LS Frost, R Leplae, AO Summers… - Nature Reviews …, 2005 - nature.com
Horizontal genomics is a new field in prokaryotic biology that is focused on the analysis of
DNA sequences in prokaryotic chromosomes that seem to have originated from other …

Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and …

PCY Woo, SKP Lau, CSF Lam, CCY Lau… - Journal of …, 2012 - Am Soc Microbiol
Recently, we reported the discovery of three novel coronaviruses, bulbul coronavirus
HKU11, thrush coronavirus HKU12, and munia coronavirus HKU13, which were identified …

OPM database and PPM web server: resources for positioning of proteins in membranes

MA Lomize, ID Pogozheva, H Joo… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Orientations of Proteins in Membranes (OPM) database is a curated web
resource that provides spatial positions of membrane-bound peptides and proteins of known …

Assessing the utility of coevolution-based residue–residue contact predictions in a sequence-and structure-rich era

H Kamisetty, S Ovchinnikov… - Proceedings of the …, 2013 - National Acad Sciences
Recently developed methods have shown considerable promise in predicting residue–
residue contacts in protein 3D structures using evolutionary covariance information …

[HTML][HTML] Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation

DE Weinberg, P Shah, SW Eichhorn, JA Hussmann… - Cell reports, 2016 - cell.com
Ribosome-footprint profiling provides genome-wide snapshots of translation, but technical
challenges can confound its analysis. Here, we use improved methods to obtain ribosome …

WebLogo: a sequence logo generator

GE Crooks, G Hon, JM Chandonia… - Genome …, 2004 - genome.cshlp.org
WebLogo generates sequence logos, graphical representations of the patterns within a
multiple sequence alignment. Sequence logos provide a richer and more precise …

UniProt: the universal protein knowledgebase

R Apweiler, A Bairoch, CH Wu, WC Barker… - Nucleic acids …, 2004 - academic.oup.com
To provide the scientific community with a single, centralized, authoritative resource for
protein sequences and functional information, the Swiss‐Prot, TrEMBL and PIR protein …

PANTHER: a library of protein families and subfamilies indexed by function

PD Thomas, MJ Campbell, A Kejariwal, H Mi… - Genome …, 2003 - genome.cshlp.org
In the genomic era, one of the fundamental goals is to characterize the function of proteins
on a large scale. We describe a method, PANTHER, for relating protein sequence …

Genome sequence of the human malaria parasite Plasmodium falciparum

MJ Gardner, N Hall, E Fung, O White, M Berriman… - Nature, 2002 - nature.com
The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of
malaria, and kills more than one million African children annually. Here we report an …