HIV-1 adaptation to HLA: a window into virus–host immune interactions

JM Carlson, AQ Le, A Shahid, ZL Brumme - Trends in microbiology, 2015 - cell.com
HIV-1 develops specific mutations within its genome that allow it to escape detection by
human leukocyte antigen (HLA) class I-restricted immune responses, notably those of CD8+ …

Retroviral integration: site matters: mechanisms and consequences of retroviral integration site selection

J Demeulemeester, J De Rijck, R Gijsbers… - …, 2015 - Wiley Online Library
Here, we review genomic target site selection during retroviral integration as a multistep
process in which specific biases are introduced at each level. The first asymmetries are …

Selective resistance profiles emerging in patient-derived clinical isolates with cabotegravir, bictegravir, dolutegravir, and elvitegravir

M Oliveira, RI Ibanescu, K Anstett, T Mésplède… - Retrovirology, 2018 - Springer
Background Integrase strand transfer inhibitors (INSTIs) are recommended for first-line HIV
therapy based on their relatively high genetic barrier to resistance. Although raltegravir …

Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1

JM Carlson, CJ Brumme, E Martin, J Listgarten… - Journal of …, 2012 - Am Soc Microbiol
ABSTRACT HLA class I-associated polymorphisms identified at the population level mark
viral sites under immune pressure by individual HLA alleles. As such, analysis of their …

Accumulation of multiple mutations in vivo confers cross-resistance to new and existing integrase inhibitors

WW Zhang, PK Cheung, N Oliveira… - The Journal of …, 2018 - academic.oup.com
Bictegravir (BIC) and cabotegravir (CAB) are the latest available HIV integrase inhibitors in
clinical trials. The combination of major integrase inhibitor substitutions G140S/Q148H has …

Conserved immunogens in prime-boost strategies for the next-generation HIV-1 vaccines

T Hanke - Expert opinion on biological therapy, 2014 - Taylor & Francis
Introduction: Effective vaccines are the best solution for stopping the spread of HIV/AIDS and
other infectious diseases. Their development and in-depth understanding of pathogen–host …

HIV-1 integrase variants retarget viral integration and are associated with disease progression in a chronic infection cohort

J Demeulemeester, S Vets, R Schrijvers, P Madlala… - Cell host & …, 2014 - cell.com
Distinct integration patterns of different retroviruses, including HIV-1, have puzzled
virologists for over 20 years. A tetramer of the viral integrase (IN) assembles on the two viral …

Impact of combinations of clinically observed HIV integrase mutations on phenotypic resistance to integrase strand transfer inhibitors (INSTIs): a molecular study

PK Cheung, A Shahid, W Dong, KJ Lepik… - Journal of …, 2022 - academic.oup.com
Background Routine HIV drug resistance genotyping identified an integrase sequence
harbouring T97A, E138K, G140S and Q148H, with high predicted resistance to all integrase …

Impaired Nef function is associated with early control of HIV-1 viremia

XT Kuang, X Li, G Anmole, P Mwimanzi… - Journal of …, 2014 - Am Soc Microbiol
Host and viral factors influence the HIV-1 infection course. Reduced Nef function has been
observed in HIV-1 controllers during the chronic phase, but the kinetics and mechanisms of …

Accumulation of Pol mutations selected by HLA-B* 52: 01-C* 12: 02 protective haplotype-restricted cytotoxic T lymphocytes causes low plasma viral load due to low …

H Murakoshi, M Koyanagi, T Chikata… - Journal of …, 2017 - Am Soc Microbiol
ABSTRACT HLA-B* 52: 01-C* 12: 02, which is the most abundant haplotype in Japan, has a
protective effect on disease progression in HIV-1-infected Japanese individuals, whereas …