The COSMIC Cancer Gene Census: describing genetic dysfunction across all human cancers

Z Sondka, S Bamford, CG Cole, SA Ward… - Nature Reviews …, 2018 - nature.com
Abstract The Catalogue of Somatic Mutations in Cancer (COSMIC) Cancer Gene Census
(CGC) is an expert-curated description of the genes driving human cancer that is used as a …

Variation interpretation predictors: principles, types, performance, and choice

A Niroula, M Vihinen - Human mutation, 2016 - Wiley Online Library
Next‐generation sequencing methods have revolutionized the speed of generating variation
information. Sequence data have a plethora of applications and will increasingly be used for …

Identification of novel mutational drivers reveals oncogene dependencies in multiple myeloma

BA Walker, K Mavrommatis, CP Wardell… - Blood, The Journal …, 2018 - ashpublications.org
Understanding the profile of oncogene and tumor suppressor gene mutations with their
interactions and impact on the prognosis of multiple myeloma (MM) can improve the …

Passenger hotspot mutations in cancer

JM Hess, A Bernards, J Kim, M Miller, A Taylor-Weiner… - Cancer Cell, 2019 - cell.com
Current statistical models for assessing hotspot significance do not properly account for
variation in site-specific mutability, thereby yielding many false-positives. We thus (i) detail a …

DriverDBv2: a database for human cancer driver gene research

IF Chung, CY Chen, SC Su, CY Li, KJ Wu… - Nucleic acids …, 2016 - academic.oup.com
We previously presented DriverDB, a database that incorporates∼ 6000 cases of exome-
seq data, in addition to annotation databases and published bioinformatics algorithms …

Comparison of algorithms for the detection of cancer drivers at subgene resolution

E Porta-Pardo, A Kamburov, D Tamborero, T Pons… - Nature …, 2017 - nature.com
Understanding genetic events that lead to cancer initiation and progression remains one of
the biggest challenges in cancer biology. Traditionally, most algorithms for cancer-driver …

Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinoma

T Zengin, T Önal-Süzek - BMC bioinformatics, 2020 - Springer
Background Lung cancer is the leading cause of the largest number of deaths worldwide
and lung adenocarcinoma is the most common form of lung cancer. In order to understand …

[HTML][HTML] Characterization of potential driver mutations involved in human breast cancer by computational approaches

BK Rajendran, CX Deng - Oncotarget, 2017 - ncbi.nlm.nih.gov
Breast cancer is the second most frequently occurring form of cancer and is also the second
most lethal cancer in women worldwide. A genetic mutation is one of the key factors that …

The somatic mutation landscape of premalignant colorectal adenoma

SH Lin, GS Raju, C Huff, Y Ye, J Gu, JS Chen… - Gut, 2018 - gut.bmj.com
Objective There are few studies which characterised the molecular alterations in
premalignant colorectal adenomas. Our major goal was to establish colorectal adenoma …

Comprehensive profiling of genomic and transcriptomic differences between risk groups of lung adenocarcinoma and lung squamous cell carcinoma

T Zengin, T Önal-Süzek - Journal of personalized medicine, 2021 - mdpi.com
Lung cancer is the second most frequently diagnosed cancer type and responsible for the
highest number of cancer deaths worldwide. Lung adenocarcinoma (LUAD) and lung …