cis-Regulatory Elements in Plant Development, Adaptation, and Evolution

AP Marand, AL Eveland, K Kaufmann… - Annual review of …, 2023 - annualreviews.org
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Adaptation to climate change through genetic accommodation and assimilation of plastic phenotypes

M Kelly - Philosophical Transactions of the Royal Society …, 2019 - royalsocietypublishing.org
Theory suggests that evolutionary changes in phenotypic plasticity could either hinder or
facilitate evolutionary rescue in a changing climate. Nevertheless, the actual role of evolving …

The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

Reciprocal transplant gardens as gold standard to detect local adaptation in grassland species: New opportunities moving into the 21st century

LC Johnson, MB Galliart, JD Alsdurf… - Journal of …, 2022 - Wiley Online Library
Local adaptation is a fundamental phenomenon in evolutionary biology, with relevance to
formation of ecotypes, and ultimately new species, and application to restoration and …

Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)

K Tiedge, X Li, AT Merrill, D Davisson, Y Chen… - New …, 2022 - Wiley Online Library
Switchgrass (Panicum virgatum) is a bioenergy model crop valued for its energy efficiency
and drought tolerance. The related monocot species rice (Oryza sativa) and maize (Zea …

Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information

P Zhou, TA Enders, ZA Myers, E Magnusson… - The Plant …, 2022 - academic.oup.com
Abstract Changes in gene expression are important for responses to abiotic stress.
Transcriptome profiling of heat-or cold-stressed maize genotypes identifies many changes in …

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

JT Lovell, J Jenkins, DB Lowry, S Mamidi… - Nature …, 2018 - nature.com
Environmental stress is a major driver of ecological community dynamics and agricultural
productivity. This is especially true for soil water availability, because drought is the greatest …

Unraveling cis and trans regulatory evolution during cotton domestication

Y Bao, G Hu, CE Grover, J Conover, D Yuan… - Nature …, 2019 - nature.com
Cis and trans regulatory divergence underlies phenotypic and evolutionary diversification.
Relatively little is understood about the complexity of regulatory evolution accompanying …

Natural variation for gene expression responses to abiotic stress in maize

AJ Waters, I Makarevitch, J Noshay… - The Plant …, 2017 - Wiley Online Library
Plants respond to abiotic stress through a variety of physiological, biochemical, and
transcriptional mechanisms. Many genes exhibit altered levels of expression in response to …

Differentially regulated orthologs in sorghum and the subgenomes of maize

Y Zhang, DW Ngu, D Carvalho, Z Liang, Y Qiu… - The Plant …, 2017 - academic.oup.com
Identifying interspecies changes in gene regulation, one of the two primary sources of
phenotypic variation, is challenging on a genome-wide scale. The use of paired time-course …