Simulations of interfacial processes: recent advances in force field development
Interfacial systems are ubiquitous and important to myriad processes of interest such as
protein-protein interactions and catalysis of reactions. Investigating interfacial systems at the …
protein-protein interactions and catalysis of reactions. Investigating interfacial systems at the …
Computational design of a cyclic peptide that inhibits the CTLA4 immune checkpoint
Proteins involved in immune checkpoint pathways, such as CTLA4, PD1, and PD-L1, have
become important targets for cancer immunotherapy; however, development of small …
become important targets for cancer immunotherapy; however, development of small …
Thermodynamics of adsorption on graphenic surfaces from aqueous solution
ER Azhagiya Singam, Y Zhang, G Magnin… - Journal of chemical …, 2018 - ACS Publications
Adsorption of organic molecules from aqueous solution to the surface of carbon nanotubes
or graphene is an important process in many applications of these materials. Here we use …
or graphene is an important process in many applications of these materials. Here we use …
Molecular simulations of surfactant adsorption on iron oxide from hydrocarbon solvents
PN Acero, S Mohr, M Bernabei, C Fernández… - Langmuir, 2021 - ACS Publications
The performance of organic friction modifiers (OFMs) depends on their ability to adsorb onto
surfaces and form protective monolayers. Understanding the relationship between OFM …
surfaces and form protective monolayers. Understanding the relationship between OFM …
Predicting the preferred morphology of hexagonal boron nitride domain structure on nickel from ReaxFF-based molecular dynamics simulations
An understanding of the nucleation and growth of hexagonal boron nitride (hBN) on nickel
substrates is essential to its development as a functional material. In particular, fundamental …
substrates is essential to its development as a functional material. In particular, fundamental …
Adsorption of amino acids on graphene: assessment of current force fields
S Dasetty, JK Barrows, S Sarupria - Soft Matter, 2019 - pubs.rsc.org
We compare the free energies of adsorption (ΔAads) and the structural preferences of amino
acids on graphene obtained using the non-polarizable force fields—Amberff99SB …
acids on graphene obtained using the non-polarizable force fields—Amberff99SB …
Catechol and its derivatives adhesion on graphene: insights from molecular dynamics simulations
Y Li, M Liao, J Zhou - The Journal of Physical Chemistry C, 2018 - ACS Publications
Understanding the interactions between aromatic compounds and organic surfaces is vital
for adhesion applications. In this work, molecular dynamics simulations are employed to …
for adhesion applications. In this work, molecular dynamics simulations are employed to …
Size Matters: Free-Energy Calculations of Amino Acid Adsorption over Pristine Graphene
M Barria-Urenda, A Ruiz-Fernandez… - Journal of Chemical …, 2023 - ACS Publications
There is still growing interest in graphene interactions with proteins, both for its possible
biological applications and due to concerns over detrimental effects at the cellular level. As …
biological applications and due to concerns over detrimental effects at the cellular level. As …
Understanding the Adsorption and Diffusion Behaviors of PBUT in Biocompatible MOFs
J Hou, M Liu, W Gao, K Yan, B Li… - The Journal of …, 2024 - ACS Publications
With the increasing incidence of chronic kidney disease, the effective control of protein-
bound uremic toxins (PBUTs), which are difficult to remove through dialysis, has become a …
bound uremic toxins (PBUTs), which are difficult to remove through dialysis, has become a …
Design of Peptides that Fold and Self-Assemble on Graphite
The graphite–water interface provides a unique environment for polypeptides that generally
favors ordered structures more than in solution. Therefore, systems consisting of designed …
favors ordered structures more than in solution. Therefore, systems consisting of designed …