Mutational signatures: From methods to mechanisms
YA Kim, MDM Leiserson, P Moorjani… - Annual Review of …, 2021 - annualreviews.org
Mutations are the driving force of evolution, yet they underlie many diseases, in particular,
cancer. They are thought to arise from a combination of stochastic errors in DNA processing …
cancer. They are thought to arise from a combination of stochastic errors in DNA processing …
Decoding human cancer with whole genome sequencing: a review of PCAWG Project studies published in February 2020
S Giunta - Cancer and Metastasis Reviews, 2021 - Springer
Cancer is underlined by genetic changes. In an unprecedented international effort, the Pan-
Cancer Analysis of Whole Genomes (PCAWG) of the International Cancer Genome …
Cancer Analysis of Whole Genomes (PCAWG) of the International Cancer Genome …
Mutational topography reflects clinical neuroblastoma heterogeneity
E Rodriguez-Fos, M Planas-Fèlix, M Burkert… - Cell Genomics, 2023 - cell.com
Neuroblastoma is a pediatric solid tumor characterized by strong clinical heterogeneity.
Although clinical risk-defining genomic alterations exist in neuroblastomas, the mutational …
Although clinical risk-defining genomic alterations exist in neuroblastomas, the mutational …
DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution
The cancer cell fraction (CCF), or proportion of cancerous cells in a tumor containing a
single-nucleotide variant (SNV), is a fundamental statistic used to quantify tumor …
single-nucleotide variant (SNV), is a fundamental statistic used to quantify tumor …
CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data
Systematic DNA sequencing of cancer samples has highlighted the importance of two
aspects of cancer genomics: intra-tumor heterogeneity (ITH) and mutational processes …
aspects of cancer genomics: intra-tumor heterogeneity (ITH) and mutational processes …
Emerging topics in cancer evolution
Cancer results from an evolutionary process that yields a heterogeneous tumor with distinct
subpopulations and varying sets of somatic mutations. This perspective discusses …
subpopulations and varying sets of somatic mutations. This perspective discusses …
Clone decomposition based on mutation signatures provides novel insights into mutational processes
T Matsutani, M Hamada - NAR genomics and bioinformatics, 2021 - academic.oup.com
Intra-tumor heterogeneity is a phenomenon in which mutation profiles differ from cell to cell
within the same tumor and is observed in almost all tumors. Understanding intra-tumor …
within the same tumor and is observed in almost all tumors. Understanding intra-tumor …
Measuring ongoing chromosomal instability in single-cell DNA sequencing data
M Schneider - 2024 - repository.cam.ac.uk
Chromosomal instability is a characteristic hallmark of cancer. It is providing part of the
genomic variation that makes cancer so heterogeneous and difficult to treat. Consequently …
genomic variation that makes cancer so heterogeneous and difficult to treat. Consequently …
[图书][B] Continuous-time latent-variable models for time series
Y Rubanova - 2020 - search.proquest.com
Time series data play a crucial role in many applications, such as biology, medicine,
economics, engineering and others. One of the most powerful approaches for time series is …
economics, engineering and others. One of the most powerful approaches for time series is …
CloneSig: joint inference of intra-tumor heterogeneity and mutational signatures' activity in tumor bulk sequencing data
The possibility to sequence DNA in cancer samples has triggered much effort recently to
identify the forces at the genomic level that shape tumorigenesis and cancer progression. It …
identify the forces at the genomic level that shape tumorigenesis and cancer progression. It …