Polymers at interfaces and the interactions in colloidal dispersions
A Vrij - Pure and Applied Chemistry, 1976 - degruyter.com
Solutions of different polymers in the same solvent are incompatible as a rule and show
phase separation when they are mixed. H incompatibility is also to be observed in systems …
phase separation when they are mixed. H incompatibility is also to be observed in systems …
A new theoretical approach to biological self-assembly
M Kinoshita - Biophysical reviews, 2013 - Springer
Upon biological self-assembly, the number of accessible translational configurations of
water in the system increases considerably, leading to a large gain in water entropy. It is …
water in the system increases considerably, leading to a large gain in water entropy. It is …
[PDF][PDF] Effects of sugars on the thermal stability of a protein
H Oshima, M Kinoshita - Biophysical Journal, 2013 - cell.com
It is experimentally known that the heat-denaturation temperature of a protein is raised by
sugar addition [1]. In earlier work [2], we proposed a measure of the thermal stability of a …
sugar addition [1]. In earlier work [2], we proposed a measure of the thermal stability of a …
Effective stiffness and formation of secondary structures in a protein-like model
We use Wang-Landau and replica exchange techniques to study the effect of an increasing
stiffness on the formation of secondary structures in protein-like systems. Two possible …
stiffness on the formation of secondary structures in protein-like systems. Two possible …
From toroidal to rod-like condensates of semiflexible polymers
The competition between toroidal and rod-like conformations as possible ground states for
DNA condensation is studied as a function of the stiffness, the length of the DNA, and the …
DNA condensation is studied as a function of the stiffness, the length of the DNA, and the …
Unraveling protein folding mechanism by analyzing the hierarchy of models with increasing level of detail
Taking protein G with 56 residues for a case study, we investigate the mechanism of protein
folding. In addition to its native structure possessing α-helix and β-sheet contents of 27 …
folding. In addition to its native structure possessing α-helix and β-sheet contents of 27 …
Effects of side-chain packing on the formation of secondary structures in protein folding
S Yasuda, T Yoshidome, H Oshima… - The Journal of …, 2010 - pubs.aip.org
We have recently shown that protein folding is driven by the water-entropy gain. When the α-
helix or β-sheet is formed, the excluded volumes generated by the backbone and side …
helix or β-sheet is formed, the excluded volumes generated by the backbone and side …
From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang–Landau approach
We use a micro-canonical Wang–Landau technique to study the equilibrium properties of a
single flexible homopolymer where consecutive monomers are represented by impenetrable …
single flexible homopolymer where consecutive monomers are represented by impenetrable …
Mapping the protein fold universe using the camtube force field in molecular dynamics simulations
It has been recently shown that the coarse-graining of the structures of polypeptide chains
as self-avoiding tubes can provide an effective representation of the conformational space of …
as self-avoiding tubes can provide an effective representation of the conformational space of …
Transcription and the aspect ratio of DNA
Two separate regimes exist for the aspect ratio of DNA. A low aspect regime where DNA will
twist further under strain and a high aspect regime where DNA will untwist under strain. The …
twist further under strain and a high aspect regime where DNA will untwist under strain. The …