As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …

Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB,
https://veupathdb. org) represents the 2019 merger of VectorBase with the EuPathDB …

Identifying differentially abundant microbes is a common goal of microbiome studies.
Multiple methods are used interchangeably for this purpose in the literature. Yet, there are …

VectorBase (VectorBase. org) is part of the VEuPathDB Bioinformatics Resource Center,
providing free online access to multi-omics and population biology data, focusing on …

Background The microbiome has been implicated in the initiation and persistence of
inflammatory bowel disease. Despite the fact that diet is one of the most potent modulators of …

High-throughput data generation platforms, like mass-spectrometry, microarrays, and
second-generation sequencing are susceptible to batch effects due to run-to-run variation in …

Background The maternal microbiome has emerged as an important factor in gestational
health and outcome and is associated with risk of preterm birth and offspring morbidity …

Background and Purpose: Environmental factors are important with respect to the rupture of
cerebral aneurysms. However, the relationship between the gut microbiome, an …

Abstract ToxoDB (http://ToxoDB. org) is the functional genomic resource for Toxoplasma and
related organisms. ToxoDB is part of the Eukaryotic Pathogen Database resources …

A variety of microorganisms inhabit the gastrointestinal tract of animals including bacteria,
archaea, fungi, protozoa, and viruses. Pioneers in gut microbiology have stressed the critical …