[HTML][HTML] A tutorial on the balanced minimum evolution problem

D Catanzaro, M Frohn, O Gascuel, R Pesenti - European Journal of …, 2022 - Elsevier
Abstract The Balanced Minimum Evolution Problem (BMEP) is an APX-hard network design
problem that consists of finding a minimum length unrooted binary tree (also called a …

[PDF][PDF] A survey of maximal k-degenerate graphs and k-trees

A Bickle - Theory and Applications of Graphs, 2024 - digitalcommons.georgiasouthern …
This article surveys results on maximal k-degenerate graphs, k-trees, and related classes
including simple k-trees, k-paths, maximal outerplanar graphs, and Apollonian networks …

The generalized Robinson-Foulds distance for phylogenetic trees

M Llabrés, F Rosselló, G Valiente - Journal of Computational …, 2021 - liebertpub.com
The Robinson-Foulds (RF) distance, one of the most widely used metrics for comparing
phylogenetic trees, has the advantage of being intuitive, with a natural interpretation in terms …

Coding through a two star and Super Mean Labeling

G Uma Maheswari, G Margaret Joan Jebarani… - … on Advances in …, 2019 - Springer
In this paper, a technique of coding a message is presented using the super mean labeling
on a two star graph K 1, m∪ K 1, n, m≤ n. A method of fixing the super mean labeling on …

Tree isomorphism

G Valiente, G Valiente - algorithms on trees and graphs, 2002 - Springer
Tree identification is the problem of determining whether two trees are isomorphic, and it is a
fundamental problem with a variety of interesting applications in diverse scientific and …

Outbreaks, Metastases and Homomorphisms: Phylogenetic Inference of Migration Histories of Heterogeneous Populations under Evolutionary and Structural …

K Kuzmin, H Schmidt, S Snir, B Raphael, P Skums - 2024 - researchsquare.com
Many human diseases, including viral infections and cancers, are driven by the evolutionary
dynamics of heterogeneous populations of genomic variants. A major type of evolutionary …

An evolution strategy approach for the balanced minimum evolution problem

A Gasparin, FJ Camerota Verdù, D Catanzaro… - …, 2023 - academic.oup.com
Abstract Motivation The Balanced Minimum Evolution (BME) is a powerful distance based
phylogenetic estimation model introduced by Desper and Gascuel and nowadays …

Enumerating vertices of the balanced minimum evolution polytope

D Catanzaro, R Pesenti - Computers & Operations Research, 2019 - Elsevier
Recent advances on the polyhedral combinatorics of the Balanced Minimum Evolution
Problem (BMEP) enabled the identification of fundamental characteristics of the convex hull …

Ranking and Unranking of the Planar Embeddings of a Planar Graph

G Di Battista, F Grosso, G Maragno… - arXiv preprint arXiv …, 2024 - arxiv.org
Let $\mathcal {G} $ be the set of all the planar embeddings of a (not necessarily connected)
$ n $-vertex graph $ G $. We present a bijection $\Phi $ from $\mathcal {G} $ to the natural …

[PDF][PDF] An Optimal Algorithm for Prufer Codes.

X Wang, L Wang, Y Wu - J. Softw. Eng. Appl., 2009 - scirp.org
This paper studies the algorithms for coding and decoding Prufer codes of a labeled tree.
The algorithms for coding and decoding Prufer codes of a labeled tree in the literatures …