Drought stress impacts on plants and different approaches to alleviate its adverse effects

MF Seleiman, N Al-Suhaibani, N Ali, M Akmal… - Plants, 2021 - mdpi.com
Drought stress, being the inevitable factor that exists in various environments without
recognizing borders and no clear warning thereby hampering plant biomass production …

Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement

AW Schulthess, SM Kale, F Liu, Y Zhao, N Philipp… - Nature Genetics, 2022 - nature.com
The great efforts spent in the maintenance of past diversity in genebanks are rationalized by
the potential role of plant genetic resources (PGR) in future crop improvement—a concept …

Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics

P Juliana, J Poland, J Huerta-Espino, S Shrestha… - Nature …, 2019 - nature.com
Bread wheat improvement using genomic tools is essential for accelerating trait genetic
gains. Here we report the genomic predictabilities of 35 key traits and demonstrate the …

Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants

K Wang, MA Abid, A Rasheed, J Crossa, S Hearne… - Molecular Plant, 2023 - cell.com
Genomic prediction is an effective way to accelerate the rate of agronomic trait improvement
in plants. Traditional methods typically use linear regression models with clear assumptions; …

The pangenome of hexaploid bread wheat

JD Montenegro, AA Golicz, PE Bayer… - The Plant …, 2017 - Wiley Online Library
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

M Wang, L Tu, M Lin, Z Lin, P Wang, Q Yang, Z Ye… - Nature …, 2017 - nature.com
Comparative population genomics offers an excellent opportunity for unraveling the genetic
history of crop domestication. Upland cotton (Gossypium hirsutum) has long been an …

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …