Schrödinger's microbes: tools for distinguishing the living from the dead in microbial ecosystems

JB Emerson, RI Adams, CMB Román, B Brooks… - Microbiome, 2017 - Springer
While often obvious for macroscopic organisms, determining whether a microbe is dead or
alive is fraught with complications. Fields such as microbial ecology, environmental health …

Dead or alive: molecular assessment of microbial viability

GA Cangelosi, JS Meschke - Applied and environmental …, 2014 - Am Soc Microbiol
Nucleic acid-based analytical methods, ranging from species-targeted PCRs to
metagenomics, have greatly expanded our understanding of microbiological diversity in …

Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification

M Fittipaldi, A Nocker, F Codony - Journal of microbiological methods, 2012 - Elsevier
The ideal scenario in most applications of microbial diagnostics is that only viable cells are
detected. Bacteria were traditionally considered viable when they could be cultured …

Maintenance and assessment of cell viability in formulation of non‐sporulating bacterial inoculants

T Berninger, Ó González López… - Microbial …, 2018 - Wiley Online Library
The application of beneficial, plant‐associated microorganisms is a sustainable approach to
improving crop performance in agriculture. However, microbial inoculants are often …

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water

R Li, HM Tun, M Jahan, Z Zhang, A Kumar… - Scientific reports, 2017 - nature.com
The limitation of 16S rRNA gene sequencing (DNA-based) for microbial community
analyses in water is the inability to differentiate live (dormant cells as well as growing or non …

Pathogens protection against the action of disinfectants in multispecies biofilms

P Sanchez-Vizuete, B Orgaz, S Aymerich… - Frontiers in …, 2015 - frontiersin.org
Biofilms constitute the prevalent way of life for microorganisms in both natural and man-
made environments. Biofilm-dwelling cells display greater tolerance to antimicrobial agents …

Recent developments in the use of viability dyes and quantitative PCR in the food microbiology field

P Elizaquível, R Aznar, G Sánchez - Journal of applied …, 2014 - academic.oup.com
The increase in foodborne outbreaks highlights the need for rapid, sensitive and specific
methods for food safety monitoring, enabling specific detection and quantification of viable …

Detection and Potential Virulence of Viable but Non-Culturable (VBNC) Listeria monocytogenes: A Review

NE Wideman, JD Oliver, PG Crandall, NA Jarvis - Microorganisms, 2021 - mdpi.com
The detection, enumeration, and virulence potential of viable but non-culturable (VBNC)
pathogens continues to be a topic of discussion. While there is a lack of definitive evidence …

How to evaluate non-growing cells—current strategies for determining antimicrobial resistance of VBNC bacteria

S Fleischmann, C Robben, T Alter, P Rossmanith… - Antibiotics, 2021 - mdpi.com
Thanks to the achievements in sanitation, hygiene practices, and antibiotics, we have
considerably improved in our ongoing battle against pathogenic bacteria. However, with our …

Recent developments in detection and enumeration of waterborne bacteria: a retrospective minireview

RA Deshmukh, K Joshi, S Bhand, U Roy - MicrobiologyOpen, 2016 - Wiley Online Library
Waterborne diseases have emerged as global health problems and their rapid and sensitive
detection in environmental water samples is of great importance. Bacterial identification and …