Macronutrient metabolism by the human gut microbiome: major fermentation by-products and their impact on host health

K Oliphant, E Allen-Vercoe - Microbiome, 2019 - Springer
The human gut microbiome is a critical component of digestion, breaking down complex
carbohydrates, proteins, and to a lesser extent fats that reach the lower gastrointestinal tract …

Escherichia coli as a host for metabolic engineering

S Pontrelli, TY Chiu, EI Lan, FYH Chen, P Chang… - Metabolic …, 2018 - Elsevier
Over the past century, Escherichia coli has become one of the best studied organisms on
earth. Features such as genetic tractability, favorable growth conditions, well characterized …

Engineering a nicotinamide mononucleotide redox cofactor system for biocatalysis

WB Black, L Zhang, WS Mak, S Maxel, Y Cui… - Nature chemical …, 2020 - nature.com
Biological production of chemicals often requires the use of cellular cofactors, such as
nicotinamide adenine dinucleotide phosphate (NADP+). These cofactors are expensive to …

Directed evolution of phosphite dehydrogenase to cycle noncanonical redox cofactors via universal growth selection platform

L Zhang, E King, WB Black, CM Heckmann… - Nature …, 2022 - nature.com
Noncanonical redox cofactors are attractive low-cost alternatives to nicotinamide adenine
dinucleotide (phosphate)(NAD (P)+) in biotransformation. However, engineering enzymes to …

Lignocellulosic bio-refinery approach for microbial 2, 3-Butanediol production

SH Hazeena, R Sindhu, A Pandey, P Binod - Bioresource technology, 2020 - Elsevier
Bio-refinery approach using agricultural and industrial waste material as feedstock is
becoming a preferred area of interest in biotechnology in the current decades. The reasons …

[HTML][HTML] Growth-coupled enzyme engineering through manipulation of redox cofactor regeneration

JR Nielsen, RA Weusthuis, WE Huang - Biotechnology Advances, 2023 - Elsevier
Enzymes need to be efficient, robust, and highly specific for their effective use in commercial
bioproduction. These properties can be introduced using various enzyme engineering …

Systematic metabolic engineering of Methylomicrobium alcaliphilum 20Z for 2, 3-butanediol production from methane

AD Nguyen, IY Hwang, OK Lee, D Kim… - Metabolic …, 2018 - Elsevier
Methane is considered a next-generation feedstock, and methanotrophic cell-based
biorefinery is attractive for production of a variety of high-value compounds from methane. In …

Versatile selective evolutionary pressure using synthetic defect in universal metabolism

L Sellés Vidal, JW Murray, JT Heap - Nature Communications, 2021 - nature.com
The non-natural needs of industrial applications often require new or improved enzymes.
The structures and properties of enzymes are difficult to predict or design de novo. Instead …

Shifting redox reaction equilibria on demand using an orthogonal redox cofactor

D Aspacio, Y Zhang, Y Cui, E Luu, E King… - Nature Chemical …, 2024 - nature.com
Nature's two redox cofactors, nicotinamide adenine dinucleotide (NAD+) and nicotinamide
adenine dinucleotide phosphate (NADP+), are held at different reduction potentials, driving …

Engineering a short, aldolase-based pathway for (R)-1, 3-butanediol production in Escherichia coli

K Nemr, JEN Müller, JC Joo, P Gawand… - Metabolic …, 2018 - Elsevier
Microbial processes can produce a wide range of compounds; however, producing complex
and long chain hydrocarbons remains a challenge. Aldol condensation offers a direct route …