A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish …
Introduction The PCR-based analysis of homologous genes has become one of the most
powerful approaches for species detection and identification, particularly with the recent …
powerful approaches for species detection and identification, particularly with the recent …
Use of autonomous reef monitoring structures to monitor changes in the marine environment in Jeju, South Korea: A brief review
Technology for monitoring natural environments can provide a basic understanding of
ecosystem changes and information for resource management. The Natural Geography in …
ecosystem changes and information for resource management. The Natural Geography in …
MinION-in-ARMS: nanopore sequencing to expedite barcoding of specimen-rich macrofaunal samples from autonomous reef monitoring structures
Autonomous Reef Monitoring Structure (ARMS) are standardized devices for sampling
biodiversity in complex marine benthic habitats such as coral reefs. When coupled with DNA …
biodiversity in complex marine benthic habitats such as coral reefs. When coupled with DNA …
Effectiveness of annealing blocking primers versus restriction enzymes for characterization of generalist diets: unexpected prey revealed in the gut contents of two …
Characterization of predator-prey interactions is challenging as researchers have to rely on
indirect methods that can be costly, biased and too imprecise to elucidate the complexity of …
indirect methods that can be costly, biased and too imprecise to elucidate the complexity of …
Effects of low pH on the coral reef cryptic invertebrate communities near CO2 vents in Papua New Guinea
Small cryptic invertebrates (the cryptofauna) are extremely abundant, ecologically important,
and species rich on coral reefs. Ongoing ocean acidification is likely to have both direct …
and species rich on coral reefs. Ongoing ocean acidification is likely to have both direct …
Responses of the coral reef cryptobiome to environmental gradients in the Red Sea
An essential component of the coral reef animal diversity is the species hidden in crevices
within the reef matrix, referred to as the cryptobiome. These organisms play an important …
within the reef matrix, referred to as the cryptobiome. These organisms play an important …
Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea
MMD Al-Rshaidat, A Snider, S Rosebraugh… - …, 2016 - cdnsciencepub.com
High-throughput sequencing (HTS) of DNA barcodes (metabarcoding), particularly when
combined with standardized sampling protocols, is one of the most promising approaches …
combined with standardized sampling protocols, is one of the most promising approaches …
Evolution and biogeography of the Zanclea-Scleractinia symbiosis
Scleractinian corals provide habitats for a broad variety of cryptofauna, which in turn may
contribute to the overall functioning of coral symbiomes. Among these invertebrates …
contribute to the overall functioning of coral symbiomes. Among these invertebrates …
Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) for describing the species diversity of two coral reefs in the Yucatan Peninsula, Mexico
LA Palomino-Alvarez, XG Vital, RE Castillo-Cupul… - Diversity, 2021 - mdpi.com
Autonomous reef monitoring structures (ARMS) have been proposed as a standardized,
passive, nondestructive sampling tool. This study assessed the ability of ARMS to capture …
passive, nondestructive sampling tool. This study assessed the ability of ARMS to capture …
Life goes on: Spatial heterogeneity promotes biodiversity in an urbanized coastal marine ecosystem
Both human populations and marine biodiversity are concentrated along coastlines, with
growing conservation interest in how these ecosystems can survive intense anthropogenic …
growing conservation interest in how these ecosystems can survive intense anthropogenic …