[HTML][HTML] In silico methods for predicting functional synonymous variants
Single nucleotide variants (SNVs) contribute to human genomic diversity. Synonymous
SNVs are previously considered to be “silent,” but mounting evidence has revealed that …
SNVs are previously considered to be “silent,” but mounting evidence has revealed that …
Timing during translation matters: synonymous mutations in human pathologies influence protein folding and function
R Rauscher, Z Ignatova - Biochemical Society Transactions, 2018 - portlandpress.com
Ribosomes translate mRNAs with non-uniform speed. Translation velocity patterns are a
conserved feature of mRNA and have evolved to fine-tune protein folding, expression and …
conserved feature of mRNA and have evolved to fine-tune protein folding, expression and …
[HTML][HTML] Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies
A Alexaki, GK Hettiarachchi, JC Athey, UK Katneni… - Scientific reports, 2019 - nature.com
Synonymous codons occur with different frequencies in different organisms, a phenomenon
termed codon usage bias. Codon optimization, a common term for a variety of approaches …
termed codon usage bias. Codon optimization, a common term for a variety of approaches …
[HTML][HTML] A computational approach to design a polyvalent vaccine against human respiratory syncytial virus
Abstract Human Respiratory Syncytial Virus (RSV) is one of the leading causes of lower
respiratory tract infections (LRTI), responsible for infecting people from all age groups—a …
respiratory tract infections (LRTI), responsible for infecting people from all age groups—a …
Immunoinformatics approach to design novel subunit vaccine against the Epstein-Barr virus
Epstein-Barr virus (EBV) is a lymphotropic virus responsible for numerous epithelial and
lymphoid cell malignancies, including gastric carcinoma, Hodgkin's lymphoma …
lymphoid cell malignancies, including gastric carcinoma, Hodgkin's lymphoma …
[HTML][HTML] In silico designing and immunoinformatics analysis of a novel peptide vaccine against metallo-beta-lactamase (VIM and IMP) variants
The rapid spread of acquired metallo-beta-lactamases (MBLs) among gram negative
pathogens is becoming a global concern. Improper use of broad-spectrum antibiotics can …
pathogens is becoming a global concern. Improper use of broad-spectrum antibiotics can …
Synonymous variants that disrupt messenger RNA structure are significantly constrained in the human population
Background The role of synonymous single-nucleotide variants in human health and
disease is poorly understood, yet evidence suggests that this class of “silent” genetic …
disease is poorly understood, yet evidence suggests that this class of “silent” genetic …
A code within a code: how codons fine-tune protein folding in the cell
AA Komar - Biochemistry (Moscow), 2021 - Springer
The genetic code sets the correspondence between the sequence of a given nucleotide
triplet in an mRNA molecule, called a codon, and the amino acid that is added to the …
triplet in an mRNA molecule, called a codon, and the amino acid that is added to the …
[HTML][HTML] Association of μ-calpain and calpastatin polymorphisms with meat tenderness in a brahman–angus population
JD Leal-Gutiérrez, MA Elzo, DD Johnson… - Frontiers in …, 2018 - frontiersin.org
Autogenous proteolytic enzymes of the calpain family are implicated in myofibrillar protein
degradation. As a result, the μ-calpain gene and its specific inhibitor, calpastatin, have been …
degradation. As a result, the μ-calpain gene and its specific inhibitor, calpastatin, have been …
Synonymous variants: necessary nuance in our understanding of cancer drivers and treatment outcomes
NM Kaissarian, D Meyer… - Journal Of The National …, 2022 - academic.oup.com
Once called “silent mutations” and assumed to have no effect on protein structure and
function, synonymous variants are now recognized to be drivers for some cancers. There …
function, synonymous variants are now recognized to be drivers for some cancers. There …