Phenome-wide association studies as a tool to advance precision medicine

JC Denny, L Bastarache… - Annual review of genomics …, 2016 - annualreviews.org
Beginning in the early 2000s, the accumulation of biospecimens linked to electronic health
records (EHRs) made possible genome-phenome studies (ie, comparative analyses of …

SJS/TEN 2017: building multidisciplinary networks to drive science and translation

KD White, R Abe, M Ardern-Jones… - The Journal of Allergy …, 2018 - Elsevier
Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) is a life-threatening,
immunologically mediated, and usually drug-induced disease with a high burden to …

Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record

WQ Wei, LA Bastarache, RJ Carroll, JE Marlo… - PloS one, 2017 - journals.plos.org
Objective To compare three groupings of Electronic Health Record (EHR) billing codes for
their ability to represent clinically meaningful phenotypes and to replicate known genetic …

Comparing deep learning and concept extraction based methods for patient phenotyping from clinical narratives

S Gehrmann, F Dernoncourt, Y Li, ET Carlson, JT Wu… - PloS one, 2018 - journals.plos.org
In secondary analysis of electronic health records, a crucial task consists in correctly
identifying the patient cohort under investigation. In many cases, the most valuable and …

Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle

JL Smith, ML Wilson, SM Nilson, TN Rowan… - BMC genomics, 2022 - Springer
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …

Cohort profile: genetics of diabetes audit and research in Tayside Scotland (GoDARTS)

HL Hebert, B Shepherd, K Milburn… - International journal …, 2018 - academic.oup.com
The prevalence of diabetes worldwide has been steadily increasing over the past 20 years.
In 1997 it was estimated to be 124 million, 1 in 2015 it was estimated to be 415 million …

The eMERGE genotype set of 83,717 subjects imputed to~ 40 million variants genome wide and association with the herpes zoster medical record phenotype

IB Stanaway, TO Hall, EA Rosenthal… - Genetic …, 2019 - Wiley Online Library
Abstract The Electronic Medical Records and Genomics (eMERGE) network is a network of
medical centers with electronic medical records linked to existing biorepository samples for …

Are genetic polymorphisms in the renin–angiotensin–aldosterone system associated with essential hypertension? Evidence from genome-wide association studies

LD Ji, JY Li, BB Yao, XB Cai, QJ Shen… - Journal of human …, 2017 - nature.com
In candidate gene era, dozens of single-nucleotide polymorphisms (SNPs) within renin–
angiotensin–aldosterone system (RAAS) have been reported to be significantly associated …

Drug response in association with pharmacogenomics and pharmacomicrobiomics: towards a better personalized medicine

R Hassan, I Allali, FE Agamah… - Briefings in …, 2021 - academic.oup.com
Researchers have long been presented with the challenge imposed by the role of genetic
heterogeneity in drug response. For many years, Pharmacogenomics and …

Genome‐wide and phenome‐wide approaches to understand variable drug actions in electronic health records

JR Robinson, JC Denny, DM Roden… - Clinical and …, 2017 - pmc.ncbi.nlm.nih.gov
Genome-wide association studies (GWAS) and phenomewide association studies
(PheWAS) have provided powerful methods for investigating the impact of genetic variation …