The potyviruses: an evolutionary synthesis is emerging

AJ Gibbs, M Hajizadeh, K Ohshima, RAC Jones - Viruses, 2020 - mdpi.com
In this review, encouraged by the dictum of Theodosius Dobzhansky that “Nothing in biology
makes sense except in the light of evolution”, we outline the likely evolutionary pathways …

Role of the genetic background in resistance to plant viruses

JL Gallois, B Moury, S German-Retana - International Journal of …, 2018 - mdpi.com
In view of major economic problems caused by viruses, the development of genetically
resistant crops is critical for breeders but remains limited by the evolution of resistance …

Transmission modes affect the population structure of potato virus Y in potato

W da Silva, D Kutnjak, Y Xu, Y Xu, J Giovannoni… - PLoS …, 2020 - journals.plos.org
Transmission is a crucial part of a viral life cycle and transmission mode can have an
important impact on virus biology. It was demonstrated that transmission mode can influence …

Phylodynamics of dengue virus 2 in Nicaragua leading up to the 2019 epidemic reveals a role for lineage turnover

P Thongsripong, SV Edgerton, S Bos, S Saborío… - BMC Ecology and …, 2023 - Springer
Background Dengue is a mosquito-borne viral disease posing a significant threat to public
health. Dengue virus (DENV) evolution is often characterized by lineage turnover, which …

Inferring demography and selection in organisms characterized by skewed offspring distributions

AM Sackman, RB Harris, JD Jensen - Genetics, 2019 - academic.oup.com
The recent increase in time-series population genomic data from experimental, natural, and
ancient populations has been accompanied by a promising growth in methodologies for …

Molecularly barcoded Zika virus libraries to probe in vivo evolutionary dynamics

MT Aliota, DM Dudley, CM Newman… - PLoS …, 2018 - journals.plos.org
Defining the complex dynamics of Zika virus (ZIKV) infection in pregnancy and during
transmission between vertebrate hosts and mosquito vectors is critical for a thorough …

Improving sustainable crop protection using population genetics concepts

M Saubin, C Louet, L Bousset, F Fabre… - Molecular …, 2023 - Wiley Online Library
Growing genetically resistant plants allows pathogen populations to be controlled and
reduces the use of pesticides. However, pathogens can quickly overcome such resistance …

Small bottleneck size in a highly multipartite virus during a complete infection cycle

R Gallet, F Fabre, G Thébaud, MT Sofonea… - Journal of …, 2018 - Am Soc Microbiol
Multipartite viruses package their genomic segments independently and thus incur the risk
of being unable to transmit their entire genome during host-to-host transmission if they …

Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance

E Rousseau, M Bonneault, F Fabre… - … of the Royal …, 2019 - royalsocietypublishing.org
Plant qualitative resistances to viruses are natural exhaustible resources that can be
impaired by the emergence of resistance-breaking (RB) virus variants. Mathematical …

A large effective population size for established within-host influenza virus infection

CK Lumby, L Zhao, J Breuer, CJR Illingworth - Elife, 2020 - elifesciences.org
Strains of the influenza virus form coherent global populations, yet exist at the level of single
infections in individual hosts. The relationship between these scales is a critical topic for …