Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare

P Suravajhala, LJA Kogelman… - Genetics Selection …, 2016 - Springer
In the past years, there has been a remarkable development of high-throughput omics (HTO)
technologies such as genomics, epigenomics, transcriptomics, proteomics and …

Rat models of human diseases and related phenotypes: a systematic inventory of the causative genes

C Szpirer - Journal of biomedical science, 2020 - Springer
The laboratory rat has been used for a long time as the model of choice in several
biomedical disciplines. Numerous inbred strains have been isolated, displaying a wide …

The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats

D Munro, T Wang, AS Chitre, O Polesskaya… - Nucleic acids …, 2022 - academic.oup.com
Heterogeneous Stock (HS) rats are a genetically diverse outbred rat population that is
widely used for studying genetics of behavioral and physiological traits. Mapping …

Tumor heterogeneity and circulating tumor cells

C Zhang, Y Guan, Y Sun, D Ai, Q Guo - Cancer letters, 2016 - Elsevier
In patients with cancer, individualized treatment strategies are generally guided by an
analysis of molecular biomarkers. However, genetic instability allows tumor cells to lose …

Rat models of metabolic syndrome

AE Kwitek - Rat Genomics, 2019 - Springer
Metabolic syndrome is a complex disorder that comprises several other complex disorders,
including obesity, hypertension, dyslipidemia, and diabetes. There are several rat models …

[HTML][HTML] Multi-omic approaches to identify genetic factors in metabolic syndrome

KC Clark, AE Kwitek - Comprehensive Physiology, 2021 - ncbi.nlm.nih.gov
Abstract Metabolic Syndrome (MetS) is a highly heritable disease and a major public health
burden worldwide. MetS diagnosis criteria is met by the simultaneous presence of any three …

Cervical vagal nerve stimulation impairs glucose tolerance and suppresses insulin release in conscious rats

HM Stauss, H Stangl, KC Clark, AE Kwitek… - Physiological …, 2018 - Wiley Online Library
Previously, we reported that cervical vagal nerve stimulation (VNS) increases blood glucose
levels and inhibits insulin secretion in anesthetized rats through afferent signaling. Since …

MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses

M Vedi, HS Nalabolu, CW Lin, MJ Hoffman, JR Smith… - Genetics, 2022 - academic.oup.com
Biological interpretation of a large amount of gene or protein data is complex. Ontology
analysis tools are imperative in finding functional similarities through overrepresentation or …

From integrative genomics to systems genetics in the rat to link genotypes to phenotypes

A Moreno-Moral, E Petretto - Disease models & …, 2016 - journals.biologists.com
Complementary to traditional gene mapping approaches used to identify the hereditary
components of complex diseases, integrative genomics and systems genetics have …

Utilizing Two Populations Derived from Tropical Maize for Genome-Wide Association Analysis of Banded Leaf and Sheath Blight Resistance

S Li, F Jiang, Y Bi, X Yin, L Li, X Zhang, J Li, M Liu… - Plants, 2024 - mdpi.com
Banded leaf and sheath blight (BLSB) in maize is a soil-borne fungal disease caused by
Rhizoctonia solani Kühn, resulting in significant yield losses. Investigating the genes …