[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
countries of the world, with the presence and abundance of bioindicator taxa, mostly …
Functional trait‐based approaches as a common framework for aquatic ecologists
Aquatic ecologists face challenges in identifying the general rules of the functioning of
ecosystems. A common framework, including freshwater, marine, benthic, and pelagic …
ecosystems. A common framework, including freshwater, marine, benthic, and pelagic …
Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment
F Keck, RC Blackman, R Bossart… - Molecular …, 2022 - Wiley Online Library
DNA metabarcoding is increasingly used for the assessment of aquatic communities, and
numerous studies have investigated the consistency of this technique with traditional …
numerous studies have investigated the consistency of this technique with traditional …
Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Abstract Analysis of environmental DNA is increasingly used to characterize ecological
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
communities, but the effectiveness of this approach depends on the accuracy of taxonomic …
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
A Hakimzadeh, A Abdala Asbun… - Molecular Ecology …, 2024 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
Freshwater phytoplankton diversity: models, drivers and implications for ecosystem properties
Our understanding on phytoplankton diversity has largely been progressing since the
publication of Hutchinson on the paradox of the plankton. In this paper, we summarise some …
publication of Hutchinson on the paradox of the plankton. In this paper, we summarise some …
[HTML][HTML] Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for …
B Bailet, L Apothéloz-Perret-Gentil, A Baričević… - Science of the Total …, 2020 - Elsevier
Ecological assessment of lakes and rivers using benthic diatom assemblages currently
requires considerable taxonomic expertise to identify species using light microscopy. This …
requires considerable taxonomic expertise to identify species using light microscopy. This …
Monitoring the ecological status of rivers with diatom eDNA metabarcoding: A comparison of taxonomic markers and analytical approaches for the inference of a …
L Apothéloz‐Perret‐Gentil, A Bouchez… - Molecular …, 2021 - Wiley Online Library
Recently, several studies demonstrated the usefulness of diatom eDNA metabarcoding as
an alternative to assess the ecological quality of rivers and streams. However, the choice of …
an alternative to assess the ecological quality of rivers and streams. However, the choice of …
[HTML][HTML] Benthic algae assessments in the EU and the US: Striving for consistency in the face of great ecological diversity
DF Charles, MG Kelly, RJ Stevenson, S Poikane… - Ecological …, 2021 - Elsevier
Freshwaters face multiple environmental problems including eutrophication, acidification,
salinization, and climate-change, all of which can lead to impairment of ecosystem structure …
salinization, and climate-change, all of which can lead to impairment of ecosystem structure …