Gene ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

GK Mazandu, ER Chimusa… - Briefings in bioinformatics, 2017 - academic.oup.com
Gene Ontology (GO) semantic similarity tools enable retrieval of semantic similarity scores,
which incorporate biological knowledge embedded in the GO structure for comparing or …

A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool

GK Mazandu, ER Chimusa, M Mbiyavanga… - …, 2016 - academic.oup.com
Gene Ontology (GO) semantic similarity measures are being used for biological knowledge
discovery based on GO annotations by integrating biological information contained in the …

Computational methods to predict protein functions from protein-protein interaction networks

B Zhao, J Wang, FX Wu - Current Protein and Peptide Science, 2017 - ingentaconnect.com
Predicting functions of proteins is a key issue in the post-genomic era. Some experimental
methods have been designed to predict protein functions. However, these methods cannot …

[HTML][HTML] An effective method to measure disease similarity using gene and phenotype associations

S Su, L Zhang, J Liu - Frontiers in Genetics, 2019 - frontiersin.org
Motivation: In order to create controlled vocabularies for shared use in different biomedical
domains, a large number of biomedical ontologies such as Disease Ontology (DO) and …

[HTML][HTML] Gfd-net: A novel semantic similarity methodology for the analysis of gene networks

JJ Díaz-Montaña, N Díaz-Díaz… - Journal of biomedical …, 2017 - Elsevier
Since the popularization of biological network inference methods, it has become crucial to
create methods to validate the resulting models. Here we present GFD-Net, the first …

Similarity calculation, enrichment analysis, and ontology visualization of biomedical ontologies using UFO

QH Nguyen, DH Le - Current Protocols, 2021 - Wiley Online Library
The rapid growth of biomedical ontologies observed in recent years has been reported to be
useful in various applications. In this article, we propose two main‐function protocols—term …

Finding most informative common ancestor in cross-ontological semantic similarity assessment: An intrinsic information content-based approach

A Adhikari, B Dutta, A Dutta - Expert Systems with Applications, 2022 - Elsevier
Semantic Similarity (SS) has become a long-standing research domain in artificial
intelligence and cognitive science for measuring the strength of the semantic relationship …

Semantic similarity measurement: an intrinsic information content model

A Adhikari, B Dutta, A Dutta… - International Journal of …, 2020 - inderscienceonline.com
Ontology dependent Semantic Similarity (SS) measurement has emerged as a new
research paradigm in finding the semantic strength between any two entities. In this regard …

[PDF][PDF] Validación de modelos genéticos en bioinformática: implementación y visualización

JJD MONTAÑA - 2022 - rio.upo.es
Validación de modelos genéticos en bioinformática: implementación y visualización Page 1
Universidad Pablo DE Olavide TESIS DOCTORAL Validación de modelos genéticos en …

[PDF][PDF] Expressions of different semantic similarity measures in the context of biomedical sciences and WordNet

GK Mazandu, ER Chimusa… - Brief Bioinform …, 2016 - researchgate.net
This survey provides an overview of mathematical expressions of different term information
content (IC) models, term semantic similarity approaches and functional similarity measures …