Gene ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery
GK Mazandu, ER Chimusa… - Briefings in bioinformatics, 2017 - academic.oup.com
Gene Ontology (GO) semantic similarity tools enable retrieval of semantic similarity scores,
which incorporate biological knowledge embedded in the GO structure for comparing or …
which incorporate biological knowledge embedded in the GO structure for comparing or …
A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool
GK Mazandu, ER Chimusa, M Mbiyavanga… - …, 2016 - academic.oup.com
Gene Ontology (GO) semantic similarity measures are being used for biological knowledge
discovery based on GO annotations by integrating biological information contained in the …
discovery based on GO annotations by integrating biological information contained in the …
Computational methods to predict protein functions from protein-protein interaction networks
Predicting functions of proteins is a key issue in the post-genomic era. Some experimental
methods have been designed to predict protein functions. However, these methods cannot …
methods have been designed to predict protein functions. However, these methods cannot …
[HTML][HTML] An effective method to measure disease similarity using gene and phenotype associations
S Su, L Zhang, J Liu - Frontiers in Genetics, 2019 - frontiersin.org
Motivation: In order to create controlled vocabularies for shared use in different biomedical
domains, a large number of biomedical ontologies such as Disease Ontology (DO) and …
domains, a large number of biomedical ontologies such as Disease Ontology (DO) and …
[HTML][HTML] Gfd-net: A novel semantic similarity methodology for the analysis of gene networks
JJ Díaz-Montaña, N Díaz-Díaz… - Journal of biomedical …, 2017 - Elsevier
Since the popularization of biological network inference methods, it has become crucial to
create methods to validate the resulting models. Here we present GFD-Net, the first …
create methods to validate the resulting models. Here we present GFD-Net, the first …
Similarity calculation, enrichment analysis, and ontology visualization of biomedical ontologies using UFO
The rapid growth of biomedical ontologies observed in recent years has been reported to be
useful in various applications. In this article, we propose two main‐function protocols—term …
useful in various applications. In this article, we propose two main‐function protocols—term …
Finding most informative common ancestor in cross-ontological semantic similarity assessment: An intrinsic information content-based approach
Semantic Similarity (SS) has become a long-standing research domain in artificial
intelligence and cognitive science for measuring the strength of the semantic relationship …
intelligence and cognitive science for measuring the strength of the semantic relationship …
Semantic similarity measurement: an intrinsic information content model
Ontology dependent Semantic Similarity (SS) measurement has emerged as a new
research paradigm in finding the semantic strength between any two entities. In this regard …
research paradigm in finding the semantic strength between any two entities. In this regard …
[PDF][PDF] Validación de modelos genéticos en bioinformática: implementación y visualización
JJD MONTAÑA - 2022 - rio.upo.es
Validación de modelos genéticos en bioinformática: implementación y visualización Page 1
Universidad Pablo DE Olavide TESIS DOCTORAL Validación de modelos genéticos en …
Universidad Pablo DE Olavide TESIS DOCTORAL Validación de modelos genéticos en …
[PDF][PDF] Expressions of different semantic similarity measures in the context of biomedical sciences and WordNet
GK Mazandu, ER Chimusa… - Brief Bioinform …, 2016 - researchgate.net
This survey provides an overview of mathematical expressions of different term information
content (IC) models, term semantic similarity approaches and functional similarity measures …
content (IC) models, term semantic similarity approaches and functional similarity measures …