Mendelian inheritance revisited: dominance and recessiveness in medical genetics

J Zschocke, PH Byers, AOM Wilkie - Nature Reviews Genetics, 2023 - nature.com
Understanding the consequences of genotype for phenotype (which ranges from molecule-
level effects to whole-organism traits) is at the core of genetic diagnostics in medicine. Many …

Rare-variant collapsing analyses for complex traits: guidelines and applications

G Povysil, S Petrovski, J Hostyk, V Aggarwal… - Nature Reviews …, 2019 - nature.com
The first phase of genome-wide association studies (GWAS) assessed the role of common
variation in human disease. Advances optimizing and economizing high-throughput …

NOS1 mutations cause hypogonadotropic hypogonadism with sensory and cognitive deficits that can be reversed in infantile mice

K Chachlaki, A Messina, V Delli, V Leysen… - Science translational …, 2022 - science.org
The nitric oxide (NO) signaling pathway in hypothalamic neurons plays a key role in the
regulation of the secretion of gonadotropin-releasing hormone (GnRH), which is crucial for …

[HTML][HTML] Analysis of missense variants in the human genome reveals widespread gene-specific clustering and improves prediction of pathogenicity

M Quinodoz, VG Peter, K Cisarova… - The American Journal of …, 2022 - cell.com
We used a machine learning approach to analyze the within-gene distribution of missense
variants observed in hereditary conditions and cancer. When applied to 840 genes from the …

The 3D mutational constraint on amino acid sites in the human proteome

B Li, DM Roden, JA Capra - Nature communications, 2022 - nature.com
Quantification of the tolerance of protein sites to genetic variation has become a cornerstone
of variant interpretation. We hypothesize that the constraint on missense variation at …

Strategies to uplift novel Mendelian gene discovery for improved clinical outcomes

EG Seaby, HL Rehm, A O'Donnell-Luria - Frontiers in Genetics, 2021 - frontiersin.org
Rare genetic disorders, while individually rare, are collectively common. They represent
some of the most severe disorders affecting patients worldwide with significant morbidity and …

Identification of pathogenic variant enriched regions across genes and gene families

E Pérez-Palma, P May, S Iqbal, LM Niestroj… - Genome …, 2020 - genome.cshlp.org
Missense variant interpretation is challenging. Essential regions for protein function are
conserved among gene-family members, and genetic variants within these regions are …

Exome-based rare-variant analyses in CKD

S Cameron-Christie, CJ Wolock… - Journal of the …, 2019 - journals.lww.com
Background Studies have identified many common genetic associations that influence renal
function and all-cause CKD, but these explain only a small fraction of variance in these traits …

The X‐linked filaminopathies: Synergistic insights from clinical and molecular analysis

EM Wade, BJ Halliday, ZA Jenkins, AC O'Neill… - Human …, 2020 - Wiley Online Library
The X‐linked filaminopathies represent a diverse group of clinical conditions, all caused by
variants in the gene FLNA. FLNA encodes the widely expressed actin binding protein …

ATAV: a comprehensive platform for population-scale genomic analyses

Z Ren, G Povysil, JA Hostyk, H Cui, N Bhardwaj… - BMC …, 2021 - Springer
Background A common approach for sequencing studies is to do joint-calling and store
variants of all samples in a single file. If new samples are continually added or controls are …