[HTML][HTML] The regulatory network behind MHC class I expression

MLM Jongsma, G Guarda, RM Spaapen - Molecular immunology, 2019 - Elsevier
The MHC class I pathway, presenting endogenously derived peptides to T lymphocytes, is
hijacked in many pathological conditions. This affects MHC class I levels and peptide …

Protein neighbors and proximity proteomics

JS Rees, XW Li, S Perrett, KS Lilley… - Molecular & Cellular …, 2015 - ASBMB
Within cells, proteins can co-assemble into functionally integrated and spatially restricted
multicomponent complexes. Often, the affinities between individual proteins are relatively …

Proximity labeling identifies a repertoire of site-specific R-loop modulators

Q Yan, P Wulfridge, J Doherty… - Nature …, 2022 - nature.com
R-loops are three-stranded nucleic acid structures that accumulate on chromatin in
neurological diseases and cancers and contribute to genome instability. Using a proximity …

Photo‐crosslinking: an emerging chemical tool for investigating molecular networks in live cells

PK Mishra, CM Yoo, E Hong, HW Rhee - ChemBioChem, 2020 - Wiley Online Library
Studying protein–protein interactions (PPIs) is useful for understanding cellular functions
and mechanisms. Evaluating these PPIs under conditions as similar as possible to native …

Illuminating the dark protein-protein interactome

MS Tabar, C Parsania, H Chen, XD Su, CG Bailey… - Cell reports …, 2022 - cell.com
In living systems, a complex network of protein-protein interactions (PPIs) underlies most
biochemical events. The human protein-protein interactome has been surveyed using yeast …

Fanconi anemia protein FANCI functions in ribosome biogenesis

SB Sondalle, S Longerich, LM Ogawa… - Proceedings of the …, 2019 - National Acad Sciences
Fanconi anemia (FA) is a disease of DNA repair characterized by bone marrow failure and a
reduced ability to remove DNA interstrand cross-links. Here, we provide evidence that the …

Proximity labeling of interacting proteins: application of BioID as a discovery tool

P Li, J Li, L Wang, LJ Di - Proteomics, 2017 - Wiley Online Library
Proteins perform biochemical functions by forming complexes, or protein–protein
interactions (PPIs). Many different approaches such as phage display, yeast hybridization …

lncRedibly versatile: biochemical and biological functions of long noncoding RNAs

EJ Shields, AF Petracovici, R Bonasio - Biochemical Journal, 2019 - portlandpress.com
Long noncoding RNAs (lncRNAs) are transcripts that do not code for proteins, but
nevertheless exert regulatory effects on various biochemical pathways, in part via …

Discovery of new RNA classes and global RNA-binding proteins

A Smirnov, C Schneider, J Hör, J Vogel - Current opinion in microbiology, 2017 - Elsevier
The identification of new RNA functions and the functional annotation of transcripts in
genomes represent exciting yet challenging endeavours of modern biology. Crucial insights …

Construction of orthogonal modular proteinaceous nanovaccine delivery vectors based on mSA-biotin binding

Y Shi, C Pan, K Wang, Y Liu, Y Sun, Y Guo, P Sun… - Nanomaterials, 2022 - mdpi.com
Proteinaceous nanovaccine delivery systems have significantly promoted the development
of various high-efficiency vaccines. However, the widely used method of coupling the …