Aromatic rings in chemical and biological recognition: energetics and structures
LM Salonen, M Ellermann… - Angewandte Chemie …, 2011 - Wiley Online Library
This review describes a multidimensional treatment of molecular recognition phenomena
involving aromatic rings in chemical and biological systems. It summarizes new results …
involving aromatic rings in chemical and biological systems. It summarizes new results …
Nature and magnitude of aromatic stacking of nucleic acid bases
J Šponer, KE Riley, P Hobza - Physical Chemistry Chemical Physics, 2008 - pubs.rsc.org
This review summarises recent advances in quantum chemical calculations of base-stacking
forces in nucleic acids. We explain in detail the very complex relationship between the gas …
forces in nucleic acids. We explain in detail the very complex relationship between the gas …
Influence of the π–π interaction on the hydrogen bonding capacity of stacked DNA/RNA bases
P Mignon, S Loverix, J Steyaert… - Nucleic Acids …, 2005 - academic.oup.com
The interplay between aromatic stacking and hydrogen bonding in nucleobases has been
investigated via high-level quantum chemical calculations. The experimentally observed …
investigated via high-level quantum chemical calculations. The experimentally observed …
Aromatische Ringe in chemischer und biologischer Erkennung: Energien und Strukturen
LM Salonen, M Ellermann, F Diederich - Angewandte Chemie, 2011 - Wiley Online Library
Abstract Dieser Aufsatz beschreibt Phänomene der molekularen Erkennung von
aromatischen Ringen in chemischen und biologischen Systemen in einem …
aromatischen Ringen in chemischen und biologischen Systemen in einem …
How well can new-generation density functional methods describe stacking interactions in biological systems?
Y Zhao, DG Truhlar - Physical Chemistry Chemical Physics, 2005 - pubs.rsc.org
We compare the performance of four recently developed DFT methods (MPW1B95,
MPWB1K, PW6B95, and PWB6K) and two previous, generally successful DFT methods …
MPWB1K, PW6B95, and PWB6K) and two previous, generally successful DFT methods …
Multipolar electrostatics
S Cardamone, TJ Hughes, PLA Popelier - … Chemistry Chemical Physics, 2014 - pubs.rsc.org
Atomistic simulation of chemical systems is currently limited by the elementary description of
electrostatics that atomic point-charges offer. Unfortunately, a model of one point-charge for …
electrostatics that atomic point-charges offer. Unfortunately, a model of one point-charge for …
π-π stacking tackled with density functional theory
M Swart, T van der Wijst, C Fonseca Guerra… - Journal of molecular …, 2007 - Springer
Through comparison with ab initio reference data, we have evaluated the performance of
various density functionals for describing π-π interactions as a function of the geometry …
various density functionals for describing π-π interactions as a function of the geometry …
Noncovalent interactions in extended systems described by the effective fragment potential method: Theory and application to nucleobase oligomers
D Ghosh, D Kosenkov, V Vanovschi… - The Journal of …, 2010 - ACS Publications
The implementation of the effective fragment potential (EFP) method within the Q-CHEM
electronic structure package is presented. The EFP method is used to study noncovalent π …
electronic structure package is presented. The EFP method is used to study noncovalent π …
Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides
Pseudouridine (Ψ) is the most common noncanonical nucleotide present in naturally
occurring RNA and serves a variety of roles in the cell, typically appearing where structural …
occurring RNA and serves a variety of roles in the cell, typically appearing where structural …
Theoretical determination of one-electron redox potentials for DNA bases, base pairs, and stacks
Y Paukku, G Hill - The Journal of Physical Chemistry A, 2011 - ACS Publications
Electron affinities, ionization potentials, and redox potentials for DNA bases, base pairs, and
N-methylated derivatives are computed at the DFT/M06-2X/6-31++ G (d, p) level of theory …
N-methylated derivatives are computed at the DFT/M06-2X/6-31++ G (d, p) level of theory …