[HTML][HTML] 2′-O-Methylation of ribosomal RNA: towards an epitranscriptomic control of translation?
PL Monaco, V Marcel, JJ Diaz, F Catez - Biomolecules, 2018 - mdpi.com
Ribosomal RNA (rRNA) undergoes post-transcriptional modification of over 200 nucleotides,
predominantly 2′-O-methylation (2′-O-Me). 2′-O-Methylation protects RNA from …
predominantly 2′-O-methylation (2′-O-Me). 2′-O-Methylation protects RNA from …
[HTML][HTML] Structure and formation of Z-DNA and Z-RNA
Despite structural differences between the right-handed conformations of A-RNA and B-
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
Locked nucleic acid (LNA) recognition of RNA: NMR solution structures of LNA: RNA hybrids
M Petersen, K Bondensgaard, J Wengel… - Journal of the …, 2002 - ACS Publications
Locked nucleic acids (LNAs) containing one or more 2 '-O, 4 '-C-methylene-linked bicyclic
ribonucleoside monomers possess a number of the prerequisites of an effective antisense …
ribonucleoside monomers possess a number of the prerequisites of an effective antisense …
A critical survey of the structure-function of the antisense oligo/RNA heteroduplex as substrate for RNase H
E Zamaratski, PI Pradeepkumar… - Journal of biochemical …, 2001 - Elsevier
The aim of this review is to draw a correlation between the structure of the DNA/RNA hybrid
and its properties as a substrate for the RNase H, as well as to point the crucial structural …
and its properties as a substrate for the RNase H, as well as to point the crucial structural …
Additive CHARMM force field for naturally occurring modified ribonucleotides
Y Xu, K Vanommeslaeghe… - Journal of …, 2016 - Wiley Online Library
More than 100 naturally occurring modified nucleotides have been found in RNA molecules,
in particular in tRNAs. We have determined molecular mechanics force field parameters …
in particular in tRNAs. We have determined molecular mechanics force field parameters …
Z-Form Adoption of Nucleic Acid is a Multi-Step Process Which Proceeds through a Melted Intermediate
The left-handed Z-conformation of nucleic acids can be adopted by both DNA and RNA
when bound by Zα domains found within a variety of innate immune response proteins. Zα …
when bound by Zα domains found within a variety of innate immune response proteins. Zα …
Interplay of LNA and 2′-O-Methyl RNA in the Structure and Thermodynamics of RNA Hybrid Systems: A Molecular Dynamics Study Using the Revised AMBER Force …
I Yildirim, E Kierzek, R Kierzek… - The journal of physical …, 2014 - ACS Publications
When used in nucleic acid duplexes, locked nucleic acid (LNA) and 2′-O-methyl RNA
residues enhance the duplex stabilities, and this makes it possible to create much better …
residues enhance the duplex stabilities, and this makes it possible to create much better …
Hydration of short DNA, RNA and 2′‐OMe oligonucleotides determined by osmotic stressing
E Rozners, J Moulder - Nucleic acids research, 2004 - academic.oup.com
Studies on hydration are important for better understanding of structure and function of
nucleic acids. We compared the hydration of self‐complementary DNA, RNA and 2′‐O …
nucleic acids. We compared the hydration of self‐complementary DNA, RNA and 2′‐O …
Ion distributions around left-and right-handed DNA and RNA duplexes: a comparative study
The ion atmosphere around nucleic acids is an integral part of their solvated structure.
However, detailed aspects of the ionic distribution are difficult to probe experimentally, and …
However, detailed aspects of the ionic distribution are difficult to probe experimentally, and …
Prediction of proton chemical shifts in RNA–their use in structure refinement and validation
JA Cromsigt, CW Hilbers, SS Wijmenga - Journal of biomolecular NMR, 2001 - Springer
An analysis is presented of experimental versus calculated chemical shifts of the non-
exchangeable protons for 28 RNA structures deposited in the Protein Data Bank, covering a …
exchangeable protons for 28 RNA structures deposited in the Protein Data Bank, covering a …