Graph representation learning in bioinformatics: trends, methods and applications

HC Yi, ZH You, DS Huang… - Briefings in …, 2022 - academic.oup.com
Graph is a natural data structure for describing complex systems, which contains a set of
objects and relationships. Ubiquitous real-life biomedical problems can be modeled as …

Network representation learning: from preprocessing, feature extraction to node embedding

J Zhou, L Liu, W Wei, J Fan - ACM Computing Surveys (CSUR), 2022 - dl.acm.org
Network representation learning (NRL) advances the conventional graph mining of social
networks, knowledge graphs, and complex biomedical and physics information networks …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Anomaly detection on attributed networks via contrastive self-supervised learning

Y Liu, Z Li, S Pan, C Gong, C Zhou… - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Anomaly detection on attributed networks attracts considerable research interests due to
wide applications of attributed networks in modeling a wide range of complex systems …

Heterogeneous graph neural network

C Zhang, D Song, C Huang, A Swami… - Proceedings of the 25th …, 2019 - dl.acm.org
Representation learning in heterogeneous graphs aims to pursue a meaningful vector
representation for each node so as to facilitate downstream applications such as link …

Multi-scale attributed node embedding

B Rozemberczki, C Allen… - Journal of Complex …, 2021 - academic.oup.com
We present network embedding algorithms that capture information about a node from the
local distribution over node attributes around it, as observed over random walks following an …

Characteristic functions on graphs: Birds of a feather, from statistical descriptors to parametric models

B Rozemberczki, R Sarkar - Proceedings of the 29th ACM international …, 2020 - dl.acm.org
In this paper, we propose a flexible notion of characteristic functions defined on graph
vertices to describe the distribution of vertex features at multiple scales. We introduce …

Representation learning for attributed multiplex heterogeneous network

Y Cen, X Zou, J Zhang, H Yang, J Zhou… - Proceedings of the 25th …, 2019 - dl.acm.org
Network embedding (or graph embedding) has been widely used in many real-world
applications. However, existing methods mainly focus on networks with single-typed …

Continuous-time dynamic network embeddings

GH Nguyen, JB Lee, RA Rossi, NK Ahmed… - … proceedings of the the …, 2018 - dl.acm.org
Networks evolve continuously over time with the addition, deletion, and changing of links
and nodes. Although many networks contain this type of temporal information, the majority of …

Aligraph: A comprehensive graph neural network platform

R Zhu, K Zhao, H Yang, W Lin, C Zhou, B Ai… - arXiv preprint arXiv …, 2019 - arxiv.org
An increasing number of machine learning tasks require dealing with large graph datasets,
which capture rich and complex relationship among potentially billions of elements. Graph …