Synthetic DNA synthesis and assembly: putting the synthetic in synthetic biology

RA Hughes, AD Ellington - Cold Spring Harbor …, 2017 - cshperspectives.cshlp.org
The chemical synthesis of DNA oligonucleotides and their assembly into synthons, genes,
circuits, and even entire genomes by gene synthesis methods has become an enabling …

Bricks and blueprints: methods and standards for DNA assembly

A Casini, M Storch, GS Baldwin, T Ellis - Nature Reviews Molecular Cell …, 2015 - nature.com
DNA assembly is a key part of constructing gene expression systems and even whole
chromosomes. In the past decade, a plethora of powerful new DNA assembly methods …

Synthetic biology in mammalian cells: next generation research tools and therapeutics

F Lienert, JJ Lohmueller, A Garg… - Nature reviews Molecular …, 2014 - nature.com
Recent progress in DNA manipulation and gene circuit engineering has greatly improved
our ability to programme and probe mammalian cell behaviour. These advances have led to …

A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world

X Yang, JC Cushman, AM Borland… - New …, 2015 - Wiley Online Library
Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis that features
nocturnal CO 2 uptake, facilitates increased water‐use efficiency (WUE), and enables CAM …

Integrating biological redesign: where synthetic biology came from and where it needs to go

JC Way, JJ Collins, JD Keasling, PA Silver - Cell, 2014 - cell.com
Synthetic biology seeks to extend approaches from engineering and computation to
redesign of biology, with goals such as generating new chemicals, improving human health …

A multi-landing pad DNA integration platform for mammalian cell engineering

L Gaidukov, L Wroblewska, B Teague… - Nucleic acids …, 2018 - academic.oup.com
Engineering mammalian cell lines that stably express many transgenes requires the precise
insertion of large amounts of heterologous DNA into well-characterized genomic loci, but …

Efficient search, mapping, and optimization of multi‐protein genetic systems in diverse bacteria

I Farasat, M Kushwaha, J Collens… - Molecular systems …, 2014 - embopress.org
Developing predictive models of multi‐protein genetic systems to understand and optimize
their behavior remains a combinatorial challenge, particularly when measurement …

Multi-kilobase homozygous targeted gene replacement in human induced pluripotent stem cells

SM Byrne, L Ortiz, P Mali, J Aach… - Nucleic acids …, 2015 - academic.oup.com
Sequence-specific nucleases such as TALEN and the CRISPR/Cas9 system have so far
been used to disrupt, correct or insert transgenes at precise locations in mammalian …

Genetically engineering self-organization of human pluripotent stem cells into a liver bud-like tissue using Gata6

P Guye, MR Ebrahimkhani, N Kipniss… - Nature …, 2016 - nature.com
Human induced pluripotent stem cells (hiPSCs) have potential for personalized and
regenerative medicine. While most of the methods using these cells have focused on …

High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies

J Cao, EM Novoa, Z Zhang, WCW Chen, D Liu… - Nature …, 2021 - nature.com
Despite significant clinical progress in cell and gene therapies, maximizing protein
expression in order to enhance potency remains a major technical challenge. Here, we …