Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling
The rapid kinetics of biological processes and associated short-lived conformational
changes pose a significant challenge in attempts to structurally visualize biomolecules …
changes pose a significant challenge in attempts to structurally visualize biomolecules …
Automated systematic evaluation of cryo-EM specimens with SmartScope
Finding the conditions to stabilize a macromolecular target for imaging remains the most
critical barrier to determining its structure by cryo-electron microscopy (cryo-EM). While …
critical barrier to determining its structure by cryo-electron microscopy (cryo-EM). While …
Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information
Efficient and high-accuracy filtering of cryo-electron microscopy (cryo-EM) micrographs is an
emerging challenge with the growing speed of data collection and sizes of datasets …
emerging challenge with the growing speed of data collection and sizes of datasets …
Optimized path planning surpasses human efficiency in cryo-EM imaging
Cryo-electron microscopy (cryo-EM) represents a powerful technology for determining
atomic models of biological macromolecules. Despite this promise, human-guided cryo-EM …
atomic models of biological macromolecules. Despite this promise, human-guided cryo-EM …
Finding Antibodies in Cryo-EM densities with CrAI
Therapeutic antibodies have emerged as a prominent class of new drugs due to their high
specificity and their ability to bind to several protein targets. Once an initial antibody has …
specificity and their ability to bind to several protein targets. Once an initial antibody has …
Smart Leginon enables cryoEM screening automation across multiple grids
A Sawh-Gopal, A Ishemgulova, EYD Chua, MF Aragon… - bioRxiv, 2023 - biorxiv.org
CryoEM multi-grid screening is often a tedious process that demands hours of attention.
Here, this protocol shows how to set up standard Leginon collection and Smart Leginon …
Here, this protocol shows how to set up standard Leginon collection and Smart Leginon …
Coupling Semi-supervised Learning with Reinforcement Learning for Better Decision Making---An application to Cryo-EM Data Collection
We consider a semi-supervised Reinforcement Learning (RL) approach that takes inputs
from a perception model. Performance of such an approach can be significantly limited by …
from a perception model. Performance of such an approach can be significantly limited by …