Emergent properties of microbial activity in heterogeneous soil microenvironments: different research approaches are slowly converging, yet major challenges remain
Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data
showing that the bulk, macroscopic parameters (eg, granulometry, pH, soil organic matter …
showing that the bulk, macroscopic parameters (eg, granulometry, pH, soil organic matter …
Beyond microbial diversity for predicting soil functions: A mini review
P Nannipieri, J Ascher-Jenull, MT Ceccherini… - Pedosphere, 2020 - Elsevier
Since the advent of sequencing technologies, the determination of microbial diversity to
predict microbial functions, which are the major determinants of soil functions, has become a …
predict microbial functions, which are the major determinants of soil functions, has become a …
Relic DNA is abundant in soil and obscures estimates of soil microbial diversity
Extracellular DNA from dead microorganisms can persist in soil for weeks to years 1–3.
Although it is implicitly assumed that the microbial DNA recovered from soil predominantly …
Although it is implicitly assumed that the microbial DNA recovered from soil predominantly …
[PDF][PDF] Assessment of fecal DNA extraction protocols for metagenomic studies
Background Shotgun metagenomic sequencing has improved our understanding of the
human gut microbiota. Various DNA extraction methods have been compared to find …
human gut microbiota. Various DNA extraction methods have been compared to find …
Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity
Soils are ubiquitous and important components of terrestrial ecosystems, richly populated
with diverse organisms with important ecological roles. DNA metabarcoding is a promising …
with diverse organisms with important ecological roles. DNA metabarcoding is a promising …
Architecture of soil microaggregates: Advanced methodologies to explore properties and functions
W Amelung, N Tang, N Siebers… - Journal of Plant …, 2024 - Wiley Online Library
The functions of soils are intimately linked to their three‐dimensional pore space and the
associated biogeochemical interfaces, mirrored in the complex structure that developed …
associated biogeochemical interfaces, mirrored in the complex structure that developed …
Extracellular DNA in environmental samples: Occurrence, extraction, quantification, and impact on microbial biodiversity assessment
Environmental DNA, ie, DNA extracted directly from environmental samples, has been used
to understand microbial communities in the environment and to monitor contemporary …
to understand microbial communities in the environment and to monitor contemporary …
Quantification of nitrogen cycle functional genes from viable archaea and bacteria in paddy soil
Aims One of the main challenges of culture-independent soil microbiology is distinguishing
the microbial community's viable fraction from dead matter. Propidium monoazide (PMA) …
the microbial community's viable fraction from dead matter. Propidium monoazide (PMA) …
The seagrass holobiont: what we know and what we still need to disclose for its possible use as an ecological indicator
Microbes and seagrass establish symbiotic relationships constituting a functional unit called
the holobiont that reacts as a whole to environmental changes. Recent studies have shown …
the holobiont that reacts as a whole to environmental changes. Recent studies have shown …
The use of extracellular DNA as a proxy for specific microbial activity
The ubiquity and relevance of extracellular DNA (exDNA) are well-known and increasingly
gaining importance in many fields of application such as medicine and environmental …
gaining importance in many fields of application such as medicine and environmental …