[HTML][HTML] Light-sheets and smart microscopy, an exciting future is dawning

S Daetwyler, RP Fiolka - Communications biology, 2023 - nature.com
Light-sheet fluorescence microscopy has transformed our ability to visualize and
quantitatively measure biological processes rapidly and over long time periods. In this …

Live-cell imaging powered by computation

H Shroff, I Testa, F Jug, S Manley - Nature Reviews Molecular Cell …, 2024 - nature.com
The proliferation of microscopy methods for live-cell imaging offers many new possibilities
for users but can also be challenging to navigate. The prevailing challenge in live-cell …

[HTML][HTML] Roadmap on wavefront shaping and deep imaging in complex media

S Gigan, O Katz, HB De Aguiar… - Journal of Physics …, 2022 - iopscience.iop.org
The last decade has seen the development of a wide set of tools, such as wavefront
shaping, computational or fundamental methods, that allow us to understand and control …

Event-driven acquisition for content-enriched microscopy

D Mahecic, WL Stepp, C Zhang, J Griffié, M Weigert… - Nature …, 2022 - nature.com
A common goal of fluorescence microscopy is to collect data on specific biological events.
Yet, the event-specific content that can be collected from a sample is limited, especially for …

At the intersection of optics and deep learning: statistical inference, computing, and inverse design

D Mengu, MS Sakib Rahman, Y Luo, J Li… - Advances in Optics …, 2022 - opg.optica.org
Deep learning has been revolutionizing information processing in many fields of science
and engineering owing to the massively growing amounts of data and the advances in deep …

do: A differentiable engine for deep lens design of computational imaging systems

C Wang, N Chen, W Heidrich - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Computational imaging systems algorithmically post-process acquisition images either to
reveal physical quantities of interest or to increase image quality, eg, deblurring. Designing …

Learning optimal wavefront shaping for multi-channel imaging

E Nehme, B Ferdman, LE Weiss, T Naor… - … on Pattern Analysis …, 2021 - ieeexplore.ieee.org
Fast acquisition of depth information is crucial for accurate 3D tracking of moving objects.
Snapshot depth sensing can be achieved by wavefront coding, in which the point-spread …

[HTML][HTML] Event-triggered STED imaging

J Alvelid, M Damenti, C Sgattoni, I Testa - Nature Methods, 2022 - nature.com
Monitoring the proteins and lipids that mediate all cellular processes requires imaging
methods with increased spatial and temporal resolution. STED (stimulated emission …

Learned, uncertainty-driven adaptive acquisition for photon-efficient multiphoton microscopy

CT Ye, J Han, K Liu, A Angelopoulos, L Griffith… - arXiv preprint arXiv …, 2023 - arxiv.org
Multiphoton microscopy (MPM) is a powerful imaging tool that has been a critical enabler for
live tissue imaging. However, since most multiphoton microscopy platforms rely on point …

Resource allocation in mammalian systems

HM Baghdassarian, NE Lewis - Biotechnology Advances, 2024 - Elsevier
Cells execute biological functions to support phenotypes such as growth, migration, and
secretion. Complementarily, each function of a cell has resource costs that constrain …