Legume phylogeny and classification in the 21st century: progress, prospects and lessons for other species–rich clades

Legume Phylogeny Working Group, A Bruneau… - Taxon, 2013 - Wiley Online Library
The Leguminosae, the third–largest angiosperm family, has a global distribution and high
ecological and economic impor tance. We examine how the legume systematic research …

Evolution of the Apicomplexa: where are we now?

DA Morrison - Trends in parasitology, 2009 - cell.com
The Apicomplexa is the only large taxonomic group whose members are entirely parasitic
and is, therefore, presumably of major interest to parasitologists. We might, for example …

Constructing a broadly inclusive seed plant phylogeny

SA Smith, JW Brown - American journal of botany, 2018 - Wiley Online Library
Premise of the Study Large phylogenies can help shed light on macroevolutionary patterns
that inform our understanding of fundamental processes that shape the tree of life. These …

[HTML][HTML] Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates

SJ Steppan, JJ Schenk - PloS one, 2017 - journals.plos.org
We combined new sequence data for more than 300 muroid rodent species with our
previously published sequences for up to five nuclear and one mitochondrial genes to …

[HTML][HTML] A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

T Särkinen, L Bohs, RG Olmstead, S Knapp - BMC evolutionary biology, 2013 - Springer
Abstract Background The Solanaceae is a plant family of great economic importance.
Despite a wealth of phylogenetic work on individual clades and a deep knowledge of …

Modeling stabilizing selection: expanding the Ornstein–Uhlenbeck model of adaptive evolution

JM Beaulieu, DC Jhwueng, C Boettiger, BC O'Meara - Evolution, 2012 - academic.oup.com
Comparative methods used to study patterns of evolutionary change in a continuous trait on
a phylogeny range from Brownian motion processes to models where the trait is assumed to …

Speciation dynamics during the global radiation of extant bats

JJ Shi, DL Rabosky - Evolution, 2015 - academic.oup.com
Species richness varies widely across extant clades, but the causes of this variation remain
poorly understood. We investigate the role of diversification rate heterogeneity in shaping …

Evidence for adaptation to fire regimes in the tropical savannas of the Brazilian Cerrado

MF Simon, T Pennington - International Journal of Plant …, 2012 - journals.uchicago.edu
A recent controversy concerns whether plant traits that are assumed to be adaptations to fire
originally evolved in response to selective factors other than fire. We contribute to this …

[HTML][HTML] Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling

A Crête-Lafrenière, LK Weir, L Bernatchez - 2012 - journals.plos.org
Considerable research efforts have focused on elucidating the systematic relationships
among salmonid fishes; an understanding of these patterns of relatedness will inform …

Molecular systematics and character evolution in Caryophyllaceae

AK Greenberg, MJ Donoghue - Taxon, 2011 - Wiley Online Library
The aim of the present study was to infer a substantially larger, more evenly sampled,
phylogenetic tree for Caryophyllaceae in order to more confidently resolve relationships …