ElasticBLAST: accelerating sequence search via cloud computing
C Camacho, GM Boratyn, V Joukov, R Vera Alvarez… - BMC …, 2023 - Springer
Background Biomedical researchers use alignments produced by BLAST (Basic Local
Alignment Search Tool) to categorize their query sequences. Producing such alignments is …
Alignment Search Tool) to categorize their query sequences. Producing such alignments is …
Enzymatic promiscuity and the evolution of bioluminescence
ST Adams Jr, SC Miller - The FEBS journal, 2020 - Wiley Online Library
Bioluminescence occurs when an enzyme, known as a luciferase, oxidizes a small‐
molecule substrate, known as a luciferin. Nature has evolved multiple distinct luciferases …
molecule substrate, known as a luciferin. Nature has evolved multiple distinct luciferases …
Narrow‐spectrum artificial light silences female fireflies (Coleoptera: Lampyridae).
The rapid spread of artificial light at night (ALAN) poses myriad problems for nocturnal
biodiversity. Bioluminescent taxa that communicate via glowing lures, warning signals, or …
biodiversity. Bioluminescent taxa that communicate via glowing lures, warning signals, or …
[HTML][HTML] Rhagophthalmidae Olivier, 1907 (Coleoptera, Elateroidea): described genera and species, current problems, and prospects for the bioluminescent and …
R Kundrata, J Hoffmannova, KR Hinson, O Keller… - ZooKeys, 2022 - ncbi.nlm.nih.gov
Abstract Rhagophthalmidae are a small beetle family known from the eastern Palaearctic
and Oriental realms. Rhagophthalmidae are closely related to railroad worms …
and Oriental realms. Rhagophthalmidae are closely related to railroad worms …
GTax: improving de novo transcriptome assembly by removing foreign RNA contamination
RV Alvarez, D Landsman - Genome Biology, 2024 - Springer
The cost and complexity of generating a complete reference genome means that many
organisms lack an annotated reference. An alternative is to use a de novo reference …
organisms lack an annotated reference. An alternative is to use a de novo reference …
Phylogenomics of Phengodidae (Coleoptera: Elateroidea): towards a natural classification of a bioluminescent and paedomorphic beetle lineage, with recognition of a …
VS Ferreira, AS Roza, FF Barbosa… - Zoological Journal of …, 2024 - academic.oup.com
Abstract Phengodidae (Coleoptera: Elateroidea), commonly known as glowworm beetles,
are a small family of bioluminescent and paedomorphic beetles. There are few phylogenetic …
are a small family of bioluminescent and paedomorphic beetles. There are few phylogenetic …
The first Phengodidae fossil (Coleoptera: Elateroidea): Cretocydistus wittmeri gen. et sp. nov. from the mid-Cretaceous Burmese amber
Elateroidea superfamily holds a huge diversity, morphological variation and a myriad of
habitat specializations. The presence of bioluminescence and paedomorphosis renders the …
habitat specializations. The presence of bioluminescence and paedomorphosis renders the …
Genome analysis of Phrixothrix hirtus (Phengodidae) railroad worm shows the expansion of odorant-binding gene families and positive selection on morphogenesis …
Among bioluminescent beetles of the Elateroidea superfamily, Phengodidae is the third
largest family, with 244 bioluminescent species distributed only in the Americas, but is still …
largest family, with 244 bioluminescent species distributed only in the Americas, but is still …
A time-calibrated firefly (Coleoptera: Lampyridae) phylogeny: using genomic data for divergence time estimation
Abstract Fireflies (Coleoptera: Lampyridae) consist of over 2,000 described extant species. A
well-resolved phylogeny of fireflies is important for the study of their population genetics …
well-resolved phylogeny of fireflies is important for the study of their population genetics …
De novo transcriptome assembly and the effect of foreign RNA contamination
RV Alvarez, D Landsman - bioRxiv, 2022 - biorxiv.org
Multiple next-generation-sequencing (NGS)-based studies are enabled by the availability of
a reference genome of the target organism. Unfortunately, several organisms remain …
a reference genome of the target organism. Unfortunately, several organisms remain …