Recent progress in non-native nucleic acid modifications

LK McKenzie, R El-Khoury, JD Thorpe… - Chemical Society …, 2021 - pubs.rsc.org
While Nature harnesses RNA and DNA to store, read and write genetic information, the
inherent programmability, synthetic accessibility and wide functionality of these nucleic acids …

i-Motif DNA: structural features and significance to cell biology

H Abou Assi, M Garavís, C González… - Nucleic acids …, 2018 - academic.oup.com
The i-motif represents a paradigmatic example of the wide structural versatility of nucleic
acids. In remarkable contrast to duplex DNA, i-motifs are four-stranded DNA structures held …

Decoding complexity in biomolecular recognition of DNA i-motifs with microarrays

K Yazdani, S Seshadri, D Tillo, M Yang… - Nucleic Acids …, 2023 - academic.oup.com
DNA i-motifs (iMs) are non-canonical C-rich secondary structures implicated in numerous
cellular processes. Though iMs exist throughout the genome, our understanding of iM …

2′-Fluoro-arabinonucleic acid (FANA): a versatile tool for probing biomolecular interactions

R El-Khoury, MJ Damha - Accounts of Chemical Research, 2021 - ACS Publications
Conspectus This Account highlights the structural features that render 2′-deoxy-2′-fluoro-
arabinonucleic acid (FANA) an ideal tool for mimicking DNA secondary structures and …

Chemical regulation of DNA i‐motifs for nanobiotechnology and therapeutics

M Debnath, K Fatma, J Dash - Angewandte Chemie, 2019 - Wiley Online Library
DNA sequences rich in cytosine have the propensity, under acidic pH, to fold into four‐
stranded intercalated DNA structures called i‐motifs. Recent studies have provided …

Telomeric i-motifs and C-strands inhibit parallel G-quadruplex extension by telomerase

R El-Khoury, M Roman, HA Assi, AL Moye… - Nucleic Acids …, 2023 - academic.oup.com
Telomeric C-rich repeated DNA sequences fold into tetrahelical i-motif structures in vitro at
acidic pH. While studies have suggested that i-motifs may form in cells, little is known about …

Prevalent sequences in the human genome can form mini i-motif structures at physiological pH

B Mir, I Serrano, D Buitrago, M Orozco… - Journal of the …, 2017 - ACS Publications
We report here the solution structure of several repetitive DNA sequences containing d
(TCGTTCCGT) and related repeats. At physiological pH, these sequences fold into i-motif …

Synthesis and biological applications of fluoro-modified nucleic acids

F Guo, Q Li, C Zhou - Organic & Biomolecular Chemistry, 2017 - pubs.rsc.org
Owing to the unique physical properties of a fluorine atom, incorporating fluoro-modifications
into nucleic acids offers striking biophysical and biochemical features, and thus significantly …

Ratiometric i-motif-based sensor for precise long-term monitoring of pH micro alterations in the nucleoplasm and interchromatin granules

NA Petrunina, AS Shtork, MM Lukina, VB Tsvetkov… - ACS …, 2023 - ACS Publications
DNA-intercalated motifs (iMs) are facile scaffolds for the design of various pH-responsive
nanomachines, including biocompatible pH sensors. First, DNA pH sensors relied on …

Stability and context of intercalated motifs (i-motifs) for biological applications

KL Irving, JJ King, ZAE Waller, CW Evans, NM Smith - Biochimie, 2022 - Elsevier
DNA is naturally dynamic and can self-assemble into alternative secondary structures
including the intercalated motif (i-motif), a four-stranded structure formed in cytosine-rich …