Pan-genomics in the human genome era
RM Sherman, SL Salzberg - Nature Reviews Genetics, 2020 - nature.com
Since the early days of the genome era, the scientific community has relied on a single
'reference'genome for each species, which is used as the basis for a wide range of genetic …
'reference'genome for each species, which is used as the basis for a wide range of genetic …
Acinetobacter baumannii: evolution of a global pathogen
LCS Antunes, P Visca, KJ Towner - Pathogens and disease, 2014 - academic.oup.com
Acinetobacter baumannii is an opportunistic nosocomial pathogen and one of the six most
important multidrug resistant microorganisms in hospitals worldwide. This human pathogen …
important multidrug resistant microorganisms in hospitals worldwide. This human pathogen …
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
L Pritchard, RH Glover, S Humphris… - Analytical …, 2016 - pubs.rsc.org
Soft rot Enterobacteriaceae (SRE) are bacterial plant pathogens that cause blackleg, wilt
and soft rot diseases on a broad range of important crop and ornamental plants worldwide …
and soft rot diseases on a broad range of important crop and ornamental plants worldwide …
Coagulase-negative staphylococci pathogenomics
X Argemi, Y Hansmann, K Prola, G Prévost - International journal of …, 2019 - mdpi.com
Coagulase-negative Staphylococci (CoNS) are skin commensal bacteria. Besides their role
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …
Performance comparison of benchtop high-throughput sequencing platforms
NJ Loman, RV Misra, TJ Dallman… - Nature …, 2012 - nature.com
Three benchtop high-throughput sequencing instruments are now available. The 454 GS
Junior (Roche), MiSeq (Illumina) and Ion Torrent PGM (Life Technologies) are laser-printer …
Junior (Roche), MiSeq (Illumina) and Ion Torrent PGM (Life Technologies) are laser-printer …
Twenty years of bacterial genome sequencing
Twenty years ago, the publication of the first bacterial genome sequence, from Haemophilus
influenzae, shook the world of bacteriology. In this Timeline, we review the first two decades …
influenzae, shook the world of bacteriology. In this Timeline, we review the first two decades …
PGAP: pan-genomes analysis pipeline
With the rapid development of DNA sequencing technology, increasing bacteria genome
data enable the biologists to dig the evolutionary and genetic information of prokaryotic …
data enable the biologists to dig the evolutionary and genetic information of prokaryotic …
Comparative genomics: the bacterial pan-genome
Bacterial genome sequencing has become so easy and accessible that the genomes of
multiple strains of more and more individual species have been and will be generated …
multiple strains of more and more individual species have been and will be generated …
Conjugative plasmids: vessels of the communal gene pool
Comparative whole-genome analyses have demonstrated that horizontal gene transfer
(HGT) provides a significant contribution to prokaryotic genome innovation. The evolution of …
(HGT) provides a significant contribution to prokaryotic genome innovation. The evolution of …
A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome
C Warinner, C Speller… - … Transactions of the …, 2015 - royalsocietypublishing.org
The field of palaeomicrobiology is dramatically expanding thanks to recent advances in high-
throughput biomolecular sequencing, which allows unprecedented access to the …
throughput biomolecular sequencing, which allows unprecedented access to the …