Directed evolution: methodologies and applications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …
and systems in a test tube through iterative rounds of gene diversifications and library …
Utility of B-factors in protein science: interpreting rigidity, flexibility, and internal motion and engineering thermostability
Z Sun, Q Liu, G Qu, Y Feng, MT Reetz - Chemical reviews, 2019 - ACS Publications
The term B-factor, sometimes called the Debye–Waller factor, temperature factor, or atomic
displacement parameter, is used in protein crystallography to describe the attenuation of X …
displacement parameter, is used in protein crystallography to describe the attenuation of X …
[HTML][HTML] PremPS: Predicting the impact of missense mutations on protein stability
Y Chen, H Lu, N Zhang, Z Zhu, S Wang… - PLoS computational …, 2020 - journals.plos.org
Computational methods that predict protein stability changes induced by missense
mutations have made a lot of progress over the past decades. Most of the available methods …
mutations have made a lot of progress over the past decades. Most of the available methods …
ProThermDB: thermodynamic database for proteins and mutants revisited after 15 years
ProThermDB is an updated version of the thermodynamic database for proteins and mutants
(ProTherm), which has∼ 31 500 data on protein stability, an increase of 84% from the …
(ProTherm), which has∼ 31 500 data on protein stability, an increase of 84% from the …
DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach
Cancer genome and other sequencing initiatives are generating extensive data on non-
synonymous single nucleotide polymorphisms (nsSNPs) in human and other genomes. In …
synonymous single nucleotide polymorphisms (nsSNPs) in human and other genomes. In …
Thermal stability enhancement: Fundamental concepts of protein engineering strategies to manipulate the flexible structure
Increasing the temperature by just a few degrees may lead to structural perturbation or
unfolding of the protein and consequent loss of function. The concepts of flexibility and …
unfolding of the protein and consequent loss of function. The concepts of flexibility and …
[HTML][HTML] FoldX as protein engineering tool: better than random based approaches?
O Buß, J Rudat, K Ochsenreither - Computational and structural …, 2018 - Elsevier
Improving protein stability is an important goal for basic research as well as for clinical and
industrial applications but no commonly accepted and widely used strategy for efficient …
industrial applications but no commonly accepted and widely used strategy for efficient …
DeepDDG: predicting the stability change of protein point mutations using neural networks
H Cao, J Wang, L He, Y Qi… - Journal of chemical …, 2019 - ACS Publications
Accurately predicting changes in protein stability due to mutations is important for protein
engineering and for understanding the functional consequences of missense mutations in …
engineering and for understanding the functional consequences of missense mutations in …
Refactored genetic codes enable bidirectional genetic isolation
JF Zürcher, WE Robertson, T Kappes, G Petris… - Science, 2022 - science.org
The near-universal genetic code defines the correspondence between codons in genes and
amino acids in proteins. We refactored the structure of the genetic code in Escherichia coli …
amino acids in proteins. We refactored the structure of the genetic code in Escherichia coli …
Stability effects of mutations and protein evolvability
N Tokuriki, DS Tawfik - Current opinion in structural biology, 2009 - Elsevier
The past several years have seen novel insights at the interface of protein biophysics and
evolution. The accepted paradigm that proteins can tolerate nearly any amino acid …
evolution. The accepted paradigm that proteins can tolerate nearly any amino acid …