Prokaryotic photosynthesis and phototrophy illuminated

DA Bryant, NU Frigaard - Trends in microbiology, 2006 - cell.com
Genome sequencing projects are revealing new information about the distribution and
evolution of photosynthesis and phototrophy. Although coverage of the five phyla containing …

Metagenomics: DNA sequencing of environmental samples

SG Tringe, EM Rubin - Nature reviews genetics, 2005 - nature.com
Although genomics has classically focused on pure, easy-to-obtain samples, such as
microbes that grow readily in culture or large animals and plants, these organisms represent …

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

DB Rusch, AL Halpern, G Sutton, KB Heidelberg… - PLoS …, 2007 - journals.plos.org
The world's oceans contain a complex mixture of micro-organisms that are for the most part,
uncharacterized both genetically and biochemically. We report here a metagenomic study of …

Comparative metagenomics of microbial communities

SG Tringe, C Von Mering, A Kobayashi, AA Salamov… - Science, 2005 - science.org
The species complexity of microbial communities and challenges in culturing representative
isolates make it difficult to obtain assembled genomes. Here we characterize and compare …

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

CL Dupont, DB Rusch, S Yooseph… - The ISME …, 2012 - academic.oup.com
Bacteria in the 16S rRNA clade SAR86 are among the most abundant uncultivated
constituents of microbial assemblages in the surface ocean for which little genomic …

Bioinformatics for whole-genome shotgun sequencing of microbial communities

K Chen, L Pachter - PLoS computational biology, 2005 - journals.plos.org
The application of whole-genome shotgun sequencing to microbial communities represents
a major development in metagenomics, the study of uncultured microbes via the tools of …

Marine bacterial and archaeal ion-pumping rhodopsins: genetic diversity, physiology, and ecology

J Pinhassi, EF DeLong, O Béjà… - Microbiology and …, 2016 - Am Soc Microbiol
The recognition of a new family of rhodopsins in marine planktonic bacteria, proton-pumping
proteorhodopsin, expanded the known phylogenetic range, environmental distribution, and …

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria

L Gómez-Consarnau, JM González, M Coll-Lladó… - Nature, 2007 - nature.com
Proteorhodopsins are bacterial light-dependent proton pumps. Their discovery within
genomic material from uncultivated marine bacterioplankton caused considerable …

Decoupling of respiration rates and abundance in marine prokaryoplankton

JH Munson-McGee, MR Lindsay, E Sintes, JM Brown… - Nature, 2022 - nature.com
The ocean–atmosphere exchange of CO2 largely depends on the balance between marine
microbial photosynthesis and respiration. Despite vast taxonomic and metabolic diversity …

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

NU Frigaard, A Martinez, TJ Mincer, EF DeLong - Nature, 2006 - nature.com
Abstract Planktonic Bacteria, Archaea and Eukarya reside and compete in the ocean's
photic zone under the pervasive influence of light. Bacteria in this environment were recently …