Knowing when to stop: Transcription termination on protein-coding genes by eukaryotic RNAPII

JB Rodríguez-Molina, S West, LA Passmore - Molecular cell, 2023 - cell.com
Gene expression is controlled in a dynamic and regulated manner to allow for the consistent
and steady expression of some proteins as well as the rapidly changing production of other …

The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain

KM Harlen, LS Churchman - Nature reviews Molecular cell biology, 2017 - nature.com
The carboxy-terminal domain (CTD) extends from the largest subunit of RNA polymerase II
(Pol II) as a long, repetitive and largely unstructured polypeptide chain. Throughout the …

Codon usage is an important determinant of gene expression levels largely through its effects on transcription

Z Zhou, Y Dang, M Zhou, L Li, C Yu… - Proceedings of the …, 2016 - National Acad Sciences
Codon usage biases are found in all eukaryotic and prokaryotic genomes, and preferred
codons are more frequently used in highly expressed genes. The effects of codon usage on …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

Molecular roles and function of circular RNAs in eukaryotic cells

LM Holdt, A Kohlmaier, D Teupser - Cellular and Molecular Life Sciences, 2018 - Springer
Protein-coding and noncoding genes in eukaryotes are typically expressed as linear
messenger RNAs, with exons arranged colinearly to their genomic order. Recent advances …

PRC2 is high maintenance

JR Yu, CH Lee, O Oksuz, JM Stafford… - Genes & …, 2019 - genesdev.cshlp.org
As the process that silences gene expression ensues during development, the stage is set
for the activity of Polycomb-repressive complex 2 (PRC2) to maintain these repressed gene …

lncRNA directs cooperative epigenetic regulation downstream of chemokine signals

Z Xing, A Lin, C Li, K Liang, S Wang, Y Liu, PK Park… - Cell, 2014 - cell.com
Summary lncRNAs are known to regulate a number of different developmental and
tumorigenic processes. Here, we report a role for lncRNA BCAR4 in breast cancer …

c-Myc regulates transcriptional pause release

PB Rahl, CY Lin, AC Seila, RA Flynn, S McCuine… - Cell, 2010 - cell.com
Recruitment of the RNA polymerase II (Pol II) transcription initiation apparatus to promoters
by specific DNA-binding transcription factors is well recognized as a key regulatory step in …

Coupling of RNA polymerase II transcription elongation with pre-mRNA splicing

T Saldi, MA Cortazar, RM Sheridan… - Journal of molecular …, 2016 - Elsevier
Pre-mRNA maturation frequently occurs at the same time and place as transcription by RNA
polymerase II. The co-transcriptionality of mRNA processing has permitted the evolution of …

Mechanisms of alternative pre-messenger RNA splicing

DL Black - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract Alternative pre-mRNA splicing is a central mode of genetic regulation in higher
eukaryotes. Variability in splicing patterns is a major source of protein diversity from the …