Neutral peptides in the gas phase: conformation and aggregation issues
E Gloaguen, M Mons, K Schwing… - Chemical Reviews, 2020 - ACS Publications
Combined IR and UV laser spectroscopic techniques in molecular beams merged with
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …
theoretical approaches have proven to be an ideal tool to elucidate intrinsic structural …
Gas-phase infrared spectroscopy of neutral peptides: Insights from the far-IR and THz domain
Gas-phase, double resonance IR spectroscopy has proven to be an excellent approach to
obtain structural information on peptides ranging from single amino acids to large peptides …
obtain structural information on peptides ranging from single amino acids to large peptides …
Functional group identification for FTIR spectra using image-based machine learning models
Fourier transform infrared spectroscopy (FTIR) is a ubiquitous spectroscopic technique.
Spectral interpretation is a time-consuming process, but it yields important information about …
Spectral interpretation is a time-consuming process, but it yields important information about …
Spectroscopy from machine learning by accurately representing the atomic polar tensor
P Schienbein - Journal of Chemical Theory and Computation, 2023 - ACS Publications
Vibrational spectroscopy is a key technique to elucidate microscopic structure and
dynamics. Without the aid of theoretical approaches, it is, however, often difficult to …
dynamics. Without the aid of theoretical approaches, it is, however, often difficult to …
Benchmarking the computational costs and quality of vibrational spectra from ab initio simulations
S Taherivardanjani, R Elfgen… - Advanced Theory …, 2022 - Wiley Online Library
The scaling behavior of ab initio molecular dynamics simulations for the different size bulk
systems of liquid methanol is presented and thereby the characteristics of every system …
systems of liquid methanol is presented and thereby the characteristics of every system …
Vibrational circular dichroism from DFT molecular dynamics: the AWV method
DR Galimberti - Journal of Chemical Theory and Computation, 2022 - ACS Publications
The paper illustrates the Activity Weighted Velocities (AWV) methodology to compute
Vibrational Circular Dichroism (VCD) anharmonic spectra from Density Functional Theory …
Vibrational Circular Dichroism (VCD) anharmonic spectra from Density Functional Theory …
Some opinions on MD-based vibrational spectroscopy of gas phase molecules and their assembly: An overview of what has been achieved and where to go
MP Gaigeot - Spectrochimica Acta Part A: Molecular and …, 2021 - Elsevier
We hereby review molecular dynamics simulations for anharmonic gas phase spectroscopy
and provide some of our opinions of where the field is heading. With these new directions …
and provide some of our opinions of where the field is heading. With these new directions …
Ultrafast transient infrared spectroscopy of photoreceptors with polarizable QM/MM dynamics
Ultrafast transient infrared (TRIR) spectroscopy is widely used to measure the excitation-
induced structural changes of protein-bound chromophores. Here, we design a novel and …
induced structural changes of protein-bound chromophores. Here, we design a novel and …
Determination of kinetic properties in unimolecular dissociation of complex systems from graph theory based analysis of an ensemble of reactive trajectories
AF Perez-Mellor, R Spezia - The Journal of Chemical Physics, 2021 - pubs.aip.org
In this paper, we report how graph theory can be used to analyze an ensemble of
independent molecular trajectories, which can react during the simulation time-length, and …
independent molecular trajectories, which can react during the simulation time-length, and …
Formation of Neutral Peptide Aggregates as Studied by Mass‐Selective IR Action Spectroscopy
The spontaneous aggregation of proteins and peptides is widely studied owing to its relation
to neurodegenerative diseases. To understand the underlying principles of peptide …
to neurodegenerative diseases. To understand the underlying principles of peptide …