Metagenomics: DNA sequencing of environmental samples
Although genomics has classically focused on pure, easy-to-obtain samples, such as
microbes that grow readily in culture or large animals and plants, these organisms represent …
microbes that grow readily in culture or large animals and plants, these organisms represent …
A bioinformatician's guide to metagenomics
V Kunin, A Copeland, A Lapidus… - Microbiology and …, 2008 - Am Soc Microbiol
As random shotgun metagenomic projects proliferate and become the dominant source of
publicly available sequence data, procedures for the best practices in their execution and …
publicly available sequence data, procedures for the best practices in their execution and …
Genome sequence of the bioplastic-producing “Knallgas” bacterium Ralstonia eutropha H16
The H2-oxidizing lithoautotrophic bacterium Ralstonia eutropha H16 is a metabolically
versatile organism capable of subsisting, in the absence of organic growth substrates, on H2 …
versatile organism capable of subsisting, in the absence of organic growth substrates, on H2 …
Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655
SY Gerdes, MD Scholle, JW Campbell… - Journal of …, 2003 - Am Soc Microbiol
Defining the gene products that play an essential role in an organism's functional repertoire
is vital to understanding the system level organization of living cells. We used a genetic …
is vital to understanding the system level organization of living cells. We used a genetic …
The genome of the ammonia‐oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
The cohort of the ammonia‐oxidizing archaea (AOA) of the phylum Thaumarchaeota is a
diverse, widespread and functionally important group of microorganisms in many …
diverse, widespread and functionally important group of microorganisms in many …
The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode
J Foster, M Ganatra, I Kamal, J Ware, K Makarova… - PLoS …, 2005 - journals.plos.org
Complete genome DNA sequence and analysis is presented for Wolbachia, the obligate
alpha-proteobacterial endosymbiont required for fertility and survival of the human filarial …
alpha-proteobacterial endosymbiont required for fertility and survival of the human filarial …
The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family
The ability of a bacterial cell to monitor and adaptively respond to its environment is crucial
for survival. After one‐and two‐component systems, extracytoplasmic function (ECF) σ …
for survival. After one‐and two‐component systems, extracytoplasmic function (ECF) σ …
The proteolytic system of lactic acid bacteria revisited: a genomic comparison
M Liu, JR Bayjanov, B Renckens, A Nauta, RJ Siezen - BMC genomics, 2010 - Springer
Background Lactic acid bacteria (LAB) are a group of gram-positive, lactic acid producing
Firmicutes. They have been extensively used in food fermentations, including the production …
Firmicutes. They have been extensively used in food fermentations, including the production …
Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes
DA Rodionov, AG Vitreschak, AA Mironov… - Journal of Biological …, 2003 - ASBMB
Using comparative analysis of genes, operons, and regulatory elements, we describe the
cobalamin (vitamin B 12) biosynthetic pathway in available prokaryotic genomes. Here we …
cobalamin (vitamin B 12) biosynthetic pathway in available prokaryotic genomes. Here we …
Structural variation in the glycan strands of bacterial peptidoglycan
W Vollmer - FEMS microbiology reviews, 2008 - academic.oup.com
The normal, unmodified glycan strands of bacterial peptidoglycan consist of alternating
residues of β-1, 4-linked N-acetylmuramic acid and N-acetylglucosamine. In many species …
residues of β-1, 4-linked N-acetylmuramic acid and N-acetylglucosamine. In many species …