The healthy human microbiome
Humans are virtually identical in their genetic makeup, yet the small differences in our DNA
give rise to tremendous phenotypic diversity across the human population. By contrast, the …
give rise to tremendous phenotypic diversity across the human population. By contrast, the …
Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends
M Ferrer, M Martínez‐Martínez, R Bargiela… - Microbial …, 2016 - Wiley Online Library
Recent reports have suggested that the establishment of industrially relevant enzyme
collections from environmental genomes has become a routine procedure. Across the …
collections from environmental genomes has become a routine procedure. Across the …
Expanded microbial genome coverage and improved protein family annotation in the COG database
MY Galperin, KS Makarova, YI Wolf… - Nucleic acids …, 2015 - academic.oup.com
Microbial genome sequencing projects produce numerous sequences of deduced proteins,
only a small fraction of which have been or will ever be studied experimentally. This leaves …
only a small fraction of which have been or will ever be studied experimentally. This leaves …
The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function
Experimental studies of Escherichia coli K-12 MG1655 often implicate poorly annotated
genes in cellular phenotypes. However, we lack a systematic understanding of these genes …
genes in cellular phenotypes. However, we lack a systematic understanding of these genes …
Metatranscriptomics for the human microbiome and microbial community functional profiling
Shotgun metatranscriptomics (MTX) is an increasingly practical way to survey microbial
community gene function and regulation at scale. This review begins by summarizing the …
community gene function and regulation at scale. This review begins by summarizing the …
The Chlamydomonas genome project: a decade on
The green alga Chlamydomonas reinhardtii is a popular unicellular organism for studying
photosynthesis, cilia biogenesis, and micronutrient homeostasis. Ten years since its …
photosynthesis, cilia biogenesis, and micronutrient homeostasis. Ten years since its …
Determinants and prediction of esterase substrate promiscuity patterns
M Martínez-Martínez, C Coscolín, G Santiago… - ACS chemical …, 2017 - ACS Publications
Esterases receive special attention because of their wide distribution in biological systems
and environments and their importance for physiology and chemical synthesis. The …
and environments and their importance for physiology and chemical synthesis. The …
The ocean sampling day consortium
A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
HAMAP in 2015: updates to the protein family classification and annotation system
I Pedruzzi, C Rivoire, AH Auchincloss… - Nucleic acids …, 2015 - academic.oup.com
HAMAP (High-quality Automated and Manual Annotation of Proteins—available at
http://hamap. expasy. org/) is a system for the automatic classification and annotation of …
http://hamap. expasy. org/) is a system for the automatic classification and annotation of …
An open invitation to the understudied proteins initiative
To the Editor—Much of life science research revolves around understanding the biological
function of proteins. Some proteins, such as the tumor suppressor p53, have been studied …
function of proteins. Some proteins, such as the tumor suppressor p53, have been studied …