Miniature inverted-repeat transposable elements: discovery, distribution, and activity

I Fattash, R Rooke, A Wong, C Hui, T Luu… - …, 2013 - cdnsciencepub.com
Eukaryotic organisms have dynamic genomes, with transposable elements (TEs) as a major
contributing factor. Although the large autonomous TEs can significantly shape genomic …

A brief review: The z-curve theory and its application in genome analysis

R Zhang, CT Zhang - Current genomics, 2014 - ingentaconnect.com
In theoretical physics, there exist two basic mathematical approaches, algebraic and
geometrical methods, which, in most cases, are complementary. In the area of genome …

A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring

ES John, Y Liu, M Podar, MB Stott, J Meneghin… - Systematic and applied …, 2019 - Elsevier
Abstract Three thermophilic Nanoarchaeota-Crenarchaeota symbiotic systems have been
described. We obtained another stable anaerobic enrichment culture at 80° C, pH 6.0 from a …

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota

IA Berg, WH Ramos-Vera, A Petri, H Huber… - …, 2010 - microbiologyresearch.org
Two new autotrophic carbon fixation cycles have been recently described in Crenarchaeota.
The 3-hydroxypropionate/4-hydroxybutyrate cycle using acetyl-coenzyme A (CoA)/propionyl …

Metabolic Versatility and Indigenous Origin of the Archaeon Thermococcus sibiricus, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis

AV Mardanov, NV Ravin, VA Svetlitchnyi… - Applied and …, 2009 - Am Soc Microbiol
Thermococcus species are widely distributed in terrestrial and marine hydrothermal areas,
as well as in deep subsurface oil reservoirs. Thermococcus sibiricus is a hyperthermophilic …

Integrated thermodynamic analysis of electron bifurcating [FeFe]-hydrogenase to inform anaerobic metabolism and H2 production

ZJ Jay, KA Hunt, KJ Chou, GJ Schut, PC Maness… - … et Biophysica Acta (BBA …, 2020 - Elsevier
Abstract Electron bifurcating,[FeFe]-hydrogenases are recently described members of the
hydrogenase family and catalyze a combination of exergonic and endergonic electron …

The Genome Sequence of the Crenarchaeon Acidilobus saccharovorans Supports a New Order, Acidilobales, and Suggests an Important Ecological Role in …

AV Mardanov, VA Svetlitchnyi… - Applied and …, 2010 - Am Soc Microbiol
Acidilobus saccharovorans is an anaerobic, organotrophic, thermoacidophilic crenarchaeon
isolated from a terrestrial hot spring. We report the complete genome sequence of A …

A tree of cellular life inferred from a genomic census of molecular functions

KM Kim, A Nasir, K Hwang… - Journal of Molecular …, 2014 - Springer
Phylogenomics aims to describe evolutionary relatedness between organisms by analyzing
genomic data. The common practice is to produce phylogenomic trees from molecular …

Molecular signatures for the Crenarchaeota and the Thaumarchaeota

RS Gupta, A Shami - Antonie van Leeuwenhoek, 2011 - Springer
Crenarchaeotes found in mesophilic marine environments were recently placed into a new
phylum of Archaea called the Thaumarchaeota. However, very few molecular characteristics …

Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis

EY Bezsudnova, TN Stekhanova, DA Suplatov… - Archives of biochemistry …, 2016 - Elsevier
PLP-Dependent fold-type IV branched-chain amino acid aminotransferases (BCATs) from
archaea have so far been poorly characterized. A new BCAT from the hyperthermophilic …