Miniature inverted-repeat transposable elements: discovery, distribution, and activity
Eukaryotic organisms have dynamic genomes, with transposable elements (TEs) as a major
contributing factor. Although the large autonomous TEs can significantly shape genomic …
contributing factor. Although the large autonomous TEs can significantly shape genomic …
A brief review: The z-curve theory and its application in genome analysis
R Zhang, CT Zhang - Current genomics, 2014 - ingentaconnect.com
In theoretical physics, there exist two basic mathematical approaches, algebraic and
geometrical methods, which, in most cases, are complementary. In the area of genome …
geometrical methods, which, in most cases, are complementary. In the area of genome …
A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring
Abstract Three thermophilic Nanoarchaeota-Crenarchaeota symbiotic systems have been
described. We obtained another stable anaerobic enrichment culture at 80° C, pH 6.0 from a …
described. We obtained another stable anaerobic enrichment culture at 80° C, pH 6.0 from a …
Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota
IA Berg, WH Ramos-Vera, A Petri, H Huber… - …, 2010 - microbiologyresearch.org
Two new autotrophic carbon fixation cycles have been recently described in Crenarchaeota.
The 3-hydroxypropionate/4-hydroxybutyrate cycle using acetyl-coenzyme A (CoA)/propionyl …
The 3-hydroxypropionate/4-hydroxybutyrate cycle using acetyl-coenzyme A (CoA)/propionyl …
Metabolic Versatility and Indigenous Origin of the Archaeon Thermococcus sibiricus, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis
AV Mardanov, NV Ravin, VA Svetlitchnyi… - Applied and …, 2009 - Am Soc Microbiol
Thermococcus species are widely distributed in terrestrial and marine hydrothermal areas,
as well as in deep subsurface oil reservoirs. Thermococcus sibiricus is a hyperthermophilic …
as well as in deep subsurface oil reservoirs. Thermococcus sibiricus is a hyperthermophilic …
Integrated thermodynamic analysis of electron bifurcating [FeFe]-hydrogenase to inform anaerobic metabolism and H2 production
Abstract Electron bifurcating,[FeFe]-hydrogenases are recently described members of the
hydrogenase family and catalyze a combination of exergonic and endergonic electron …
hydrogenase family and catalyze a combination of exergonic and endergonic electron …
The Genome Sequence of the Crenarchaeon Acidilobus saccharovorans Supports a New Order, Acidilobales, and Suggests an Important Ecological Role in …
AV Mardanov, VA Svetlitchnyi… - Applied and …, 2010 - Am Soc Microbiol
Acidilobus saccharovorans is an anaerobic, organotrophic, thermoacidophilic crenarchaeon
isolated from a terrestrial hot spring. We report the complete genome sequence of A …
isolated from a terrestrial hot spring. We report the complete genome sequence of A …
A tree of cellular life inferred from a genomic census of molecular functions
Phylogenomics aims to describe evolutionary relatedness between organisms by analyzing
genomic data. The common practice is to produce phylogenomic trees from molecular …
genomic data. The common practice is to produce phylogenomic trees from molecular …
Molecular signatures for the Crenarchaeota and the Thaumarchaeota
RS Gupta, A Shami - Antonie van Leeuwenhoek, 2011 - Springer
Crenarchaeotes found in mesophilic marine environments were recently placed into a new
phylum of Archaea called the Thaumarchaeota. However, very few molecular characteristics …
phylum of Archaea called the Thaumarchaeota. However, very few molecular characteristics …
Experimental and computational studies on the unusual substrate specificity of branched-chain amino acid aminotransferase from Thermoproteus uzoniensis
EY Bezsudnova, TN Stekhanova, DA Suplatov… - Archives of biochemistry …, 2016 - Elsevier
PLP-Dependent fold-type IV branched-chain amino acid aminotransferases (BCATs) from
archaea have so far been poorly characterized. A new BCAT from the hyperthermophilic …
archaea have so far been poorly characterized. A new BCAT from the hyperthermophilic …