Neurogenesis in primates versus rodents and the value of non-human primate models

R Zhang, H Quan, Y Wang, F Luo - National Science Review, 2023 - academic.oup.com
Neurogenesis, the process of generating neurons from neural stem cells, occurs during both
embryonic and adult stages, with each stage possessing distinct characteristics. Dysfunction …

Cellular control of protein levels: A systems biology perspective

V Munro, V Kelly, CB Messner, G Kustatscher - Proteomics, 2024 - Wiley Online Library
How cells regulate protein levels is a central question of biology. Over the past decades,
molecular biology research has provided profound insights into the mechanisms and the …

On the decoupling of evolutionary changes in mRNA and protein levels

D Jiang, AL Cope, J Zhang… - Molecular Biology and …, 2023 - academic.oup.com
Variation in gene expression across lineages is thought to explain much of the observed
phenotypic variation and adaptation. The protein is closer to the target of natural selection …

Single‐worm quantitative proteomics reveals aging heterogeneity in isogenic Caenorhabditis elegans

TY Zhu, ST Li, DD Liu, X Zhang, L Zhou, R Zhou… - Aging cell, 2024 - Wiley Online Library
The heterogeneity of aging has been investigated at cellular and organic levels in the
mouse model and human, but the exploration of aging heterogeneity at whole‐organism …

PTMoreR-enabled cross-species PTM mapping and comparative phosphoproteomics across mammals

S Wang, Y Di, Y Yang, B Salovska, W Li, L Hu, J Yin… - Cell Reports …, 2024 - cell.com
To support PTM proteomic analysis and annotation in different species, we developed
PTMoreR, a user-friendly tool that considers the surrounding amino acid sequences of PTM …

Quantitative proteomic analysis of serum reveals MST1 as a potential candidate biomarker in spontaneously diabetic cynomolgus monkeys

C Tian, M Qiu, H Lv, F Yue, F Zhou - ACS omega, 2022 - ACS Publications
The prevalence of type 2 diabetes (T2DM) is increasing globally, creating essential
demands for T2DM animal models for the study of disease pathogenesis, prevention, and …

[HTML][HTML] Experimental and phylogenetic evidence for correlated gene expression evolution in endometrial and skin fibroblasts

A Dighe, J Maziarz, A Ibrahim-Hashim, RA Gatenby… - Iscience, 2024 - cell.com
Gene expression change is a dominant mode of evolution. Mutations, however, can affect
gene expression in multiple cell types. Therefore, gene expression evolution in one cell type …

Phylogenetic analysis reveals how selection and mutation shape the coevolution of mRNA and protein abundances

AL Cope, JG Schraiber, M Pennell - bioRxiv, 2024 - biorxiv.org
The regulatory mechanisms that shape mRNA and protein abundances are intensely
studied. Much less is known about the evolutionary processes that shape the relationship …

AnnoPRO: an Innovative Strategy for Protein Function Annotation based on Image-like Protein Representation and Multimodal Deep Learning

L Zheng, S Shi, P Fang, H Zhang, Z Pan, S Huang… - bioRxiv, 2023 - biorxiv.org
Protein function annotation has been one of the longstanding issues, which is key for
discovering drug targets and understanding physiological or pathological process. A variety …

[HTML][HTML] Synovial fluid extracellular vesicles as arthritis biomarkers: the added value of lipid-profiling and integrated omics

L Varela, CHA van de Lest… - Extracellular Vesicles …, 2024 - oaepublish.com
Arthritis, a diverse group of inflammatory joint disorders, poses great challenges in early
diagnosis and targeted treatment. Timely intervention is imperative, yet conventional …