Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
White spruce (Picea glauca) is a dominant conifer of the boreal forests of North America, and
providing genomics resources for this commercially valuable tree will help improve forest …
providing genomics resources for this commercially valuable tree will help improve forest …
Diversity of mitochondrial genome organization
AA Kolesnikov, ES Gerasimov - Biochemistry (Moscow), 2012 - Springer
In this review, we discuss types of mitochondrial genome structural organization
(architecture), which includes the following characteristic features: size and the shape of …
(architecture), which includes the following characteristic features: size and the shape of …
[HTML][HTML] The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
The macronuclear genome of the ciliate Oxytricha trifallax displays an extreme and unique
eukaryotic genome architecture with extensive genomic variation. During sexual genome …
eukaryotic genome architecture with extensive genomic variation. During sexual genome …
[HTML][HTML] The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development
Programmed DNA rearrangements in the single-celled eukaryote Oxytricha trifallax
completely rewire its germline into a somatic nucleus during development. This elaborate …
completely rewire its germline into a somatic nucleus during development. This elaborate …
[HTML][HTML] Loss, replacement and gain of proteins at the origin of the mitochondria
We review what has been inferred about the changes at the level of the proteome that
accompanied the evolution of the mitochondrion from an alphaproteobacterium. We regard …
accompanied the evolution of the mitochondrion from an alphaproteobacterium. We regard …
[HTML][HTML] Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement
Genome duality in ciliated protozoa offers a unique system to showcase their epigenome as
a model of inheritance. In Oxytricha, the somatic genome is responsible for vegetative …
a model of inheritance. In Oxytricha, the somatic genome is responsible for vegetative …
[HTML][HTML] Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont “Candidatus Pinguicoccus …
V Serra, L Gammuto, V Nitla, M Castelli, O Lanzoni… - Scientific reports, 2020 - nature.com
Taxonomy is the science of defining and naming groups of biological organisms based on
shared characteristics and, more recently, on evolutionary relationships. With the birth of …
shared characteristics and, more recently, on evolutionary relationships. With the birth of …
[HTML][HTML] Mitochondrial genomic landscape: a portrait of the mitochondrial genome 40 years after the first complete sequence
Notwithstanding the initial claims of general conservation, mitochondrial genomes are a
largely heterogeneous set of organellar chromosomes which displays a bewildering …
largely heterogeneous set of organellar chromosomes which displays a bewildering …
Further analyses on the phylogeny of the subclass Scuticociliatia (Protozoa, Ciliophora) based on both nuclear and mitochondrial data
T Zhang, X Fan, F Gao, SA Al-Farraj… - Molecular Phylogenetics …, 2019 - Elsevier
So far, the phylogenetic studies on ciliated protists have mainly based on single locus, the
nuclear ribosomal DNA (rDNA). In order to avoid the limitations of single gene/genome trees …
nuclear ribosomal DNA (rDNA). In order to avoid the limitations of single gene/genome trees …
The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
SH Aeschlimann, F Jönsson, J Postberg… - Genome biology and …, 2014 - academic.oup.com
Stylonychia lemnae is a classical model single-celled eukaryote, and a quintessential ciliate
typified by dimorphic nuclei: A small, germline micronucleus and a massive, vegetative …
typified by dimorphic nuclei: A small, germline micronucleus and a massive, vegetative …