Energy-driven genome regulation by ATP-dependent chromatin remodellers

S Eustermann, AB Patel, KP Hopfner, Y He… - … Reviews Molecular Cell …, 2024 - nature.com
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …

Chromatin remodellers as therapeutic targets

HA Malone, CWM Roberts - Nature Reviews Drug Discovery, 2024 - nature.com
Large-scale cancer genome sequencing studies have revealed that chromatin regulators
are frequently mutated in cancer. In particular, more than 20% of cancers harbour mutations …

Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient

MR King, KM Ruff, AZ Lin, A Pant, M Farag… - Cell, 2024 - cell.com
Nucleoli are multicomponent condensates defined by coexisting sub-phases. We identified
distinct intrinsically disordered regions (IDRs), including acidic (D/E) tracts and K-blocks …

Solutes unmask differences in clustering versus phase separation of FET proteins

M Kar, LT Vogel, G Chauhan, S Felekyan… - Nature …, 2024 - nature.com
Phase separation and percolation contribute to phase transitions of multivalent
macromolecules. Contributions of percolation are evident through the viscoelasticity of …

Dominance analysis to assess solute contributions to multicomponent phase equilibria

D Qian, H Ausserwoger, T Sneideris, M Farag… - Proceedings of the …, 2024 - pnas.org
Phase separation in aqueous solutions of macromolecules underlies the generation of
biomolecular condensates in cells. Condensates are membraneless bodies, representing …

Prion-like domain mediated phase separation of ARID1A promotes oncogenic potential of Ewing's sarcoma

YR Kim, J Joo, HJ Lee, C Kim, JC Park, YS Yu… - Nature …, 2024 - nature.com
Liquid-liquid phase separation (LLPS) facilitates the formation of membraneless organelles
within cells, with implications in various biological processes and disease states. AT-rich …

Epigenetic pioneering by SWI/SNF family remodelers

K Ahmad, S Brahma, S Henikoff - Molecular Cell, 2024 - cell.com
In eukaryotic genomes, transcriptional machinery and nucleosomes compete for binding to
DNA sequences; thus, a crucial aspect of gene regulatory element function is to modulate …

KMT2 family of H3K4 methyltransferases: enzymatic activity-dependent and-independent functions

HT Van, G Xie, P Dong, Z Liu, K Ge - Journal of Molecular Biology, 2024 - Elsevier
Abstract Histone-lysine N-methyltransferase 2 (KMT2) methyltransferases play critical roles
in gene regulation, cell differentiation, animal development, and human diseases. KMT2 …

Phase separation of YAP-MAML2 differentially regulates the transcriptome

CI Chung, J Yang, X Yang, H Liu… - Proceedings of the …, 2024 - National Acad Sciences
Phase separation (PS) drives the formation of biomolecular condensates that are emerging
biological structures involved in diverse cellular processes. Recent studies have unveiled …

Interplay of condensation and chromatin binding underlies BRD4 targeting

AR Strom, JM Eeftens, Y Polyachenko… - Molecular biology of …, 2024 - Am Soc Cell Biol
Nuclear compartments form via biomolecular phase separation, mediated through
multivalent properties of biomolecules concentrated within condensates. Certain …