[HTML][HTML] Looping back to leap forward: transcription enters a new era

M Levine, C Cattoglio, R Tjian - Cell, 2014 - cell.com
Comparative genome analyses reveal that organismal complexity scales not with gene
number but with gene regulation. Recent efforts indicate that the human genome likely …

Context-specific regulation and function of mRNA alternative polyadenylation

S Mitschka, C Mayr - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Alternative cleavage and polyadenylation (APA) is a widespread mechanism to generate
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …

[HTML][HTML] Transcription impacts the efficiency of mRNA translation via co-transcriptional N6-adenosine methylation

B Slobodin, R Han, V Calderone, JAFO Vrielink… - Cell, 2017 - cell.com
Transcription and translation are two main pillars of gene expression. Due to the different
timings, spots of action, and mechanisms of regulation, these processes are mainly …

[HTML][HTML] Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis

G Haimovich, DA Medina, SZ Causse, M Garber… - Cell, 2013 - cell.com
Maintaining proper mRNA levels is a key aspect in the regulation of gene expression. The
balance between mRNA synthesis and decay determines these levels. We demonstrate that …

The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription

J Bonnet, CY Wang, T Baptista, SD Vincent… - Genes & …, 2014 - genesdev.cshlp.org
The SAGA (Spt–Ada–Gcn5 acetyltransferase) coactivator complex contains distinct
chromatin-modifying activities and is recruited by DNA-bound activators to regulate the …

The translation elongation factor eEF1A1 couples transcription to translation during heat shock response

M Vera, B Pani, LA Griffiths, C Muchardt, CM Abbott… - Elife, 2014 - elifesciences.org
Translation elongation factor eEF1A has a well-defined role in protein synthesis. In this
study, we demonstrate a new role for eEF1A: it participates in the entire process of the heat …

Imaging mRNA in vivo, from birth to death

E Tutucci, NM Livingston, RH Singer… - Annual review of …, 2018 - annualreviews.org
RNA is the fundamental information transfer system in the cell. The ability to follow single
messenger RNAs (mRNAs) from transcription to degradation with fluorescent probes gives …

Transcript buffering: a balancing act between mRNA synthesis and mRNA degradation

HTM Timmers, L Tora - Molecular cell, 2018 - cell.com
Transcript buffering involves reciprocal adjustments between overall rates in mRNA
synthesis and degradation to maintain similar cellular concentrations of mRNAs. This …

A group 3 medulloblastoma stem cell program is maintained by OTX2-mediated alternative splicing

O Saulnier, J Zagozewski, L Liang, LD Hendrikse… - Nature Cell …, 2024 - nature.com
OTX2 is a transcription factor and known driver in medulloblastoma (MB), where it is
amplified in a subset of tumours and overexpressed in most cases of group 3 and group 4 …

Single-cell and single-molecule analysis of gene expression regulation

M Vera, J Biswas, A Senecal, RH Singer… - Annual review of …, 2016 - annualreviews.org
Recent advancements in single-cell and single-molecule imaging technologies have
resolved biological processes in time and space that are fundamental to understanding the …