Geodiff: A geometric diffusion model for molecular conformation generation
Predicting molecular conformations from molecular graphs is a fundamental problem in
cheminformatics and drug discovery. Recently, significant progress has been achieved with …
cheminformatics and drug discovery. Recently, significant progress has been achieved with …
Geometric deep learning for drug discovery
Drug discovery is a time-consuming and expensive process. With the development of
Artificial Intelligence (AI) techniques, molecular Geometric Deep Learning (GDL) has …
Artificial Intelligence (AI) techniques, molecular Geometric Deep Learning (GDL) has …
Learning gradient fields for molecular conformation generation
We study a fundamental problem in computational chemistry known as molecular
conformation generation, trying to predict stable 3D structures from 2D molecular graphs …
conformation generation, trying to predict stable 3D structures from 2D molecular graphs …
[HTML][HTML] Distinct biological ages of organs and systems identified from a multi-omics study
Biological age (BA) has been proposed to evaluate the aging status instead of chronological
age (CA). Our study shows evidence that there might be multiple" clocks" within the whole …
age (CA). Our study shows evidence that there might be multiple" clocks" within the whole …
[HTML][HTML] Machine learning based energy-free structure predictions of molecules, transition states, and solids
The computational prediction of atomistic structure is a long-standing problem in physics,
chemistry, materials, and biology. Conventionally, force-fields or ab initio methods determine …
chemistry, materials, and biology. Conventionally, force-fields or ab initio methods determine …
Euclidean distance matrices: essential theory, algorithms, and applications
Euclidean distance matrices (EDMs) are matrices of the squared distances between points.
The definition is deceivingly simple; thanks to their many useful properties, they have found …
The definition is deceivingly simple; thanks to their many useful properties, they have found …
An end-to-end framework for molecular conformation generation via bilevel programming
Predicting molecular conformations (or 3D structures) from molecular graphs is a
fundamental problem in many applications. Most existing approaches are usually divided …
fundamental problem in many applications. Most existing approaches are usually divided …
Application of artificial intelligence for COVID-19 epidemic: an exploratory study, opportunities, challenges, and future prospects
The occurrence of coronavirus (COVID-19) is greater than that of 2003 representing
respiratory infections syndrome (SARS). As of 12 August 2020, the reported cases are more …
respiratory infections syndrome (SARS). As of 12 August 2020, the reported cases are more …
DSOS and SDSOS optimization: more tractable alternatives to sum of squares and semidefinite optimization
AA Ahmadi, A Majumdar - SIAM Journal on Applied Algebra and Geometry, 2019 - SIAM
In recent years, optimization theory has been greatly impacted by the advent of sum of
squares (SOS) optimization. The reliance of this technique on large-scale semidefinite …
squares (SOS) optimization. The reliance of this technique on large-scale semidefinite …
A data-enhanced distributionally robust optimization method for economic dispatch of integrated electricity and natural gas systems with wind uncertainty
B Zhao, T Qian, W Tang, Q Liang - Energy, 2022 - Elsevier
With growing penetrations of wind power in electricity systems, the coordinated dispatch of
integrated electricity and natural gas systems is becoming a popular research topic …
integrated electricity and natural gas systems is becoming a popular research topic …