AlphaFold2 can predict single-mutation effects
JM McBride, K Polev, A Abdirasulov, V Reinharz… - Physical Review Letters, 2023 - APS
AlphaFold2 (AF) is a promising tool, but is it accurate enough to predict single mutation
effects? Here, we report that the localized structural deformation between protein pairs …
effects? Here, we report that the localized structural deformation between protein pairs …
[PDF][PDF] 20 years of crystal hits: progress and promise in ultrahigh-throughput crystallization screening
Diffraction-based structural methods contribute a large fraction of the biomolecular structural
models available, providing a critical understanding of macromolecular architecture. These …
models available, providing a critical understanding of macromolecular architecture. These …
[PDF][PDF] IceBear: an intuitive and versatile web application for research-data tracking from crystallization experiment to PDB deposition
E Daniel, MM Maksimainen, N Smith… - … Section D: Structural …, 2021 - journals.iucr.org
The web-based IceBear software is a versatile tool to monitor the results of crystallization
experiments and is designed to facilitate supervisor and student communications. It also …
experiments and is designed to facilitate supervisor and student communications. It also …
Graphene quantum dots as nucleants for protein crystallization
Structural analysis of proteins using X-ray crystallography is crucial for discovering their
biochemical functionalities. However, growing X-ray-quality crystals of proteins is often a …
biochemical functionalities. However, growing X-ray-quality crystals of proteins is often a …
AlphaFold2 can predict single-mutation effects
JM McBride, K Polev, A Abdirasulov, V Reinharz… - bioRxiv, 2022 - biorxiv.org
AlphaFold2 (AF) is a promising tool, but is it accurate enough to predict single mutation
effects? Here, we report that the localized structural deformation between protein pairs …
effects? Here, we report that the localized structural deformation between protein pairs …
High-throughput screening to obtain crystal hits for protein crystallography
GR Budziszewski, ME Snell, TR Wright… - JoVE (Journal of …, 2023 - app.jove.com
X-ray crystallography is the most commonly employed technique to discern macromolecular
structures, but the crucial step of crystallizing a protein into an ordered lattice amenable to …
structures, but the crucial step of crystallizing a protein into an ordered lattice amenable to …
[PDF][PDF] AlphaFold2 can predict structural and phenotypic effects of single mutations
AlphaFold2 (AF2) is a promising tool for structural biology, but is it sufficiently accurate to
predict the effect of missense mutations? We find that structural variation between closely …
predict the effect of missense mutations? We find that structural variation between closely …
Polo: an open‐source graphical user interface for crystallization screening
ET Holleman, E Duguid, LJ Keefe… - Journal of applied …, 2021 - Wiley Online Library
Polo is a Python‐based graphical user interface designed to streamline viewing and
analysis of images to monitor crystal growth, with a specific target to enable users of the …
analysis of images to monitor crystal growth, with a specific target to enable users of the …
Biological data sources for advancements in systems biology
Biological data sources are important in several scientific fields, such as bioinformatics,
systems biology, and genomics. Biological sources have played an essential role in …
systems biology, and genomics. Biological sources have played an essential role in …
Data-and diversity-driven development of a Shotgun crystallization screen using the Protein Data Bank
G Abrahams, J Newman - Acta Crystallographica Section D …, 2021 - journals.iucr.org
Protein crystallization has for decades been a critical and restrictive step in macromolecular
structure determination via X-ray diffraction. Crystallization typically involves a multi-stage …
structure determination via X-ray diffraction. Crystallization typically involves a multi-stage …